View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5233_high_9 (Length: 429)
Name: NF5233_high_9
Description: NF5233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5233_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 1 - 410
Target Start/End: Complemental strand, 33675629 - 33675220
Alignment:
| Q |
1 |
aataaaagagttgacttcagagggagcttttgatttccaaagtgattaatcaagaagaaaaatagcccaactcaacccaaagaatgcgtaaggaattata |
100 |
Q |
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| T |
33675629 |
aataaaagagttgacttcagagggagcttttgatttccaaagtgattaatcaagaagaaaaatagcccaactcaacccaaagaatgcgtaaggaattata |
33675530 |
T |
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| Q |
101 |
tacaacggcaagctttgcaagttgcaacaacnnnnnnncagcccagaaagatcaaaggactaattccttttattcatgttacaagataaatgaatagaat |
200 |
Q |
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| T |
33675529 |
tacaacggcaagctttgcaagttgcaacaacaaaaaaacagcccagaaagatcaaaggactaattccttttattcatgttacaagataaatgaatagaat |
33675430 |
T |
|
| Q |
201 |
caaatttattatgtatgtaagaattgactggtcttagaaaagcaaaagaactttggatattcttggacaattattttccatgaggcatataacccaaaga |
300 |
Q |
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| T |
33675429 |
caaatttattatgtatgtaagaattgactggtcttagaaaagcaaaagaactttggatattcttggacaattattttccatgaggcatataacccaaaga |
33675330 |
T |
|
| Q |
301 |
ctgttaatgtaaaaattcaagctattaatttttcctccaatgcggttttgaatattcagaacacatctaagacctaaaccaaacaggctctgcagcaaca |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33675329 |
ctgttaatgtaaaaattcaagctattaatttttcctccaatgcggttttgaatatccagaacacatctaagacctaaaccaaacaggctctgcagcaaca |
33675230 |
T |
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| Q |
401 |
gtgcaagata |
410 |
Q |
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| T |
33675229 |
gtgcaagata |
33675220 |
T |
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