View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5233_low_10 (Length: 403)
Name: NF5233_low_10
Description: NF5233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5233_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 13 - 388
Target Start/End: Original strand, 440311 - 440687
Alignment:
| Q |
13 |
aatataaacacaaggatggttacaatctactttatcaattaccaaaatcatccacttagcagaagtactgctaacaagatgtgtattgtctatatttctg |
112 |
Q |
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| T |
440311 |
aatataaacacaaggatggttacaatatactttatcaattaccaaaatcatccacttagcagaagtactgctaacaagatgtgtattgtctatatttctg |
440410 |
T |
|
| Q |
113 |
atattggcaaaagctttatgtggttcttgattcaagatagatcttactggagagagactt-aggttccaaaattcagtatctgttcataaatctgcaatc |
211 |
Q |
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| T |
440411 |
atattagcaaaagctttatgtggttcttgattcaagatagatcttaccggagagagacttgaggttccaaaattcagtatctgttcttaaatatgcaatc |
440510 |
T |
|
| Q |
212 |
caatttctcttctcaagcttttattatgtttaaactcaatagctaattgattcatgtggaggcataactaaattacatccaagttctcaaaagacaacaa |
311 |
Q |
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|||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
440511 |
caatttctctactcaagcttttattatgtttagactcaatagctaattgattcatgtggaggcataactaaactacatccaagttctcaaaagacaacaa |
440610 |
T |
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| Q |
312 |
cgtcaatagacgcataaggcatatacttatagcaaaagaatgacacaagaaataagcaatgaaaataagtgaaatat |
388 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
440611 |
cgtcaatagacgcataaggcatatacttatagcaaaagaatgacacaagaaataagcaatgaaaataagtgaaatat |
440687 |
T |
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