View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5233_low_12 (Length: 346)
Name: NF5233_low_12
Description: NF5233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5233_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 309; Significance: 1e-174; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 333
Target Start/End: Complemental strand, 41621910 - 41621578
Alignment:
| Q |
1 |
caccattgctttggtttcattcactaaatcagaatcaaacctgatttgcctgaacccagctcttttgttcctgacctgccattgcttgtaggtctcaggc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41621910 |
caccattgctttggtttcattcactaaatcagaatcaaacctgatttgcctgaacccagctcttttgttcctgacctgccattgcttgtaggtctcaggc |
41621811 |
T |
|
| Q |
101 |
ctttcgaccctctcggcaccctcacaagctataacatttatagcatcccttccaaacaaccctctctcaagcatcaacctttgcgggtcttcgcaaggca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41621810 |
ctttcgaccctctcggcaccctcacaagctataacatttatagcatcccttccaaacaaccctctctcaagcatcaacctttgcgggtcttcgcaaggca |
41621711 |
T |
|
| Q |
201 |
cgttagcctcaaacatatcaaacaacgatgagaagtggtagagtgcttccctaaaccgagtcaggaaaaacggtgcactataacttccattgacaactcc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| ||||||| |
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| T |
41621710 |
cgttagcctcaaacatatcaaacaacgatgagaagtggtagagtgcttccttaaaccgagtcaggaaaaacggtgcgttataacttccattggcaactcc |
41621611 |
T |
|
| Q |
301 |
atggaagaagattttcggattaatcttcctgat |
333 |
Q |
| |
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||||||||||| ||| ||||||||||||||||| |
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| T |
41621610 |
atggaagaagacttttggattaatcttcctgat |
41621578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 333
Target Start/End: Complemental strand, 41625256 - 41624924
Alignment:
| Q |
1 |
caccattgctttggtttcattcactaaatcagaatcaaacctgatttgcctgaacccagctcttttgttcctgacctgccattgcttgtaggtctcaggc |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||| |
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| T |
41625256 |
caccattgctttggtttcattcaccaaatcagaatccaacctgatttgcttgaacccagctctcttgttcctgacctgccactgcttgtaggtctcaggc |
41625157 |
T |
|
| Q |
101 |
ctttcgaccctctcggcaccctcacaagctataacatttatagcatcccttccaaacaaccctctctcaagcatcaacctttgcgggtcttcgcaaggca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |||||| | ||||| |
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| T |
41625156 |
ctttcgaccctctcggcaccctcacaagctataacatttatagcatcccttccaaacaaccctctctcaagcattgacctctgcgtgtcttcacgaggca |
41625057 |
T |
|
| Q |
201 |
cgttagcctcaaacatatcaaacaacgatgagaagtggtagagtgcttccctaaaccgagtcaggaaaaacggtgcactataacttccattgacaactcc |
300 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| ||||||| |
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| T |
41625056 |
cattagcctcaaacatatcaaacaacgatgagaagtggtagagtgcttccttaaaccgagtcaggaaaaacggtgcgttataacttccattggcaactcc |
41624957 |
T |
|
| Q |
301 |
atggaagaagattttcggattaatcttcctgat |
333 |
Q |
| |
|
||||||||||| ||| ||||||||||||||||| |
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| T |
41624956 |
atggaagaagacttttggattaatcttcctgat |
41624924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 5 - 333
Target Start/End: Complemental strand, 41628213 - 41627885
Alignment:
| Q |
5 |
attgctttggtttcattcactaaatcagaatcaaacctgatttgcctgaacccagctcttttgttcctgacctgccattgcttgtaggtctcaggccttt |
104 |
Q |
| |
|
|||| ||| ||||||||||||||||| ||||| |||||||||||| ||||||||||||| || |||||||||||||| |||||||||||||||||||||| |
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| T |
41628213 |
attgttttcgtttcattcactaaatccgaatccaacctgatttgcttgaacccagctctcttattcctgacctgccactgcttgtaggtctcaggccttt |
41628114 |
T |
|
| Q |
105 |
cgaccctctcggcaccctcacaagctataacatttatagcatcccttccaaacaaccctctctcaagcatcaacctttgcgggtcttcgcaaggcacgtt |
204 |
Q |
| |
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| ||||| || |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||| ||| |||||| | ||||||||| |
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| T |
41628113 |
caaccctttctgcaccctcacaagctataacatttatggcatctcttccaaacaaccctctctcaagcatcgacctctgcatgtcttcacgaggcacgtt |
41628014 |
T |
|
| Q |
205 |
agcctcaaacatatcaaacaacgatgagaagtggtagagtgcttccctaaaccgagtcaggaaaaacggtgcactataacttccattgacaactccatgg |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||| ||||||||||| |
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| T |
41628013 |
agcctcaaacatatcaaacaacgatgagaagtggtagagtgcttccttaaaccgagtcgggaaaaacggtgcgctataacttccattggcaactccatgg |
41627914 |
T |
|
| Q |
305 |
aagaagattttcggattaatcttcctgat |
333 |
Q |
| |
|
||||||| ||| ||||||||||||||||| |
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| T |
41627913 |
aagaagacttttggattaatcttcctgat |
41627885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 59 - 333
Target Start/End: Complemental strand, 23931030 - 23930753
Alignment:
| Q |
59 |
gctcttttgttcctgacctgccattgcttgtaggtctcaggcctttcgaccctctcggcaccctcacaagctataacatttatagcatcccttccaaaca |
158 |
Q |
| |
|
||||| |||||||| |||||||| |||||||| ||||| |||||||| |||||||| || || ||||||||||| ||||||| ||||||||||| || | |
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| T |
23931030 |
gctctcttgttcctaacctgccactgcttgtaagtctctggcctttcaaccctctctgctccttcacaagctatcacatttactgcatcccttccgaata |
23930931 |
T |
|
| Q |
159 |
accctctctcaagcatcaacct---ttgcgggtcttcgcaaggcacgttagcctcaaacatatcaaacaacgatgagaagtggtagagtgcttccctaaa |
255 |
Q |
| |
|
||||| |||||| ||||| ||| ||| ||||| | ||||| |||| |||| |||||||||||| |||||||| ||| | ||||||||||| || |
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| T |
23930930 |
accctttctcaatcatcagcctatattgatcatcttcacgcggcaccgtagcttcaagcatatcaaacaatgatgagaaatggaatagtgcttccctgaa |
23930831 |
T |
|
| Q |
256 |
ccgagtcaggaaaaacggtgcactataacttccattgacaactccatggaagaagattttcggattaatcttcctgat |
333 |
Q |
| |
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|| ||| || ||||| ||||| ||||| ||||||| || || ||||| | ||| || || ||||||||| ||||||| |
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| T |
23930830 |
cctagtaagaaaaaagggtgcgttataagttccattcactacaccatgtatgaaaatgtttggattaatcctcctgat |
23930753 |
T |
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