View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5233_low_13 (Length: 305)
Name: NF5233_low_13
Description: NF5233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5233_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 4960829 - 4960543
Alignment:
| Q |
1 |
tctgaccatagtttaataccttgttgaaaaccgttgtatacccatcttatgccacgattatgtaagtctagaattaatatagtcgttgtctgttccttat |
100 |
Q |
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| T |
4960829 |
tctgaccattgtttaataccttgttgaaaaccgttgtatacacatcttatgccacggttatgtaagtgtagaattaacatagtcgttgtatgttccttat |
4960730 |
T |
|
| Q |
101 |
aagcaagagtttgtagtcgttggtatttaaaccttaatttataattgtggcttttccttgcttaatagacaacatggagaaaatggtggcttataccgtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| ||||||||| ||||| |
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| T |
4960729 |
aagcaagagtttgtagtcgttggtatttaaaccttaatttataactgtggcttttccttaaataatagacaacatggagaaaatagtggcttatgccgtt |
4960630 |
T |
|
| Q |
201 |
tcttcccatggtttcaaaatattgtaggccaccatttgataacagttgttgttaataattgcaaaccgtggactaaaacattttaga |
287 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
4960629 |
tcttcccatggtttcaaaatattgtaggccaccatttgataacagttgttgttaataattgcaaatcgtggactaaaacattttaga |
4960543 |
T |
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Back To:
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Target: chr6 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 80 - 287
Target Start/End: Complemental strand, 22475771 - 22475564
Alignment:
| Q |
80 |
tagtcgttgtctgttccttataagcaagagtttgtagtcgttggtatttaaaccttaatttataattgtggcttttccttgcttaatagacaacatggag |
179 |
Q |
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||||||||| || ||||||||||||||| |||| | ||||||| |||||||||||||||| |||| | | | ||||||| |||||| ||||| || |
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| T |
22475771 |
tagtcgttgcctattccttataagcaagggtttatggtcgttgatatttaaaccttaattaataaccgcgacctttccttaaataatagtcaacacggta |
22475672 |
T |
|
| Q |
180 |
aaaatggtggcttataccgtttcttcccatggtttcaaaatattgtaggccaccatttgataacagttgttgttaataattgcaaaccgtggactaaaac |
279 |
Q |
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||| | ||||| ||||| | ||||||||| |||||||||||||| | || |||| || ||||| |||| ||||||||| || |||||||| ||||| |
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| T |
22475671 |
aaagtcgtggcctatactgcttcttcccacggtttcaaaatattttcggacacccattaataaccattgtgtttaataattacagaccgtggattaaaat |
22475572 |
T |
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| Q |
280 |
attttaga |
287 |
Q |
| |
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|||||||| |
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|
| T |
22475571 |
attttaga |
22475564 |
T |
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