View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5233_low_14 (Length: 272)
Name: NF5233_low_14
Description: NF5233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5233_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 17 - 261
Target Start/End: Original strand, 8189685 - 8189929
Alignment:
| Q |
17 |
aaattgagctcgatgatcaatagaaacaactgatgcaacaactggaggtgaaacctcaaatggagacacctcaactttggtattgtcatgatcatccaaa |
116 |
Q |
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| T |
8189685 |
aaattgagctcgatgatcaatagaaacaactgatgcaacaactggaggtgaaacctcaaatggagacacctcaactttggtattgtcatgatcatccaaa |
8189784 |
T |
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| Q |
117 |
acattgggtgaaaaggtcggcaacacaacaggaggtacaatgttaggtgccaaagtagggggcatccattagagcatccataagtgaaacagtgcaaaaa |
216 |
Q |
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| T |
8189785 |
acattgggtgaaaaggtcggcaacacaacaggaggtacaatgttaggtgccaaagtagggggcatccattggagcatccataagtgaaacagtgcaaaaa |
8189884 |
T |
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| Q |
217 |
caaaatgagaaaggttttgccactgcgtaagttactgtcattcat |
261 |
Q |
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| T |
8189885 |
caaaatgagaaaggtgttgccactgcgtaagttactgtcattcat |
8189929 |
T |
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Back To:
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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 107 - 215
Target Start/End: Original strand, 40338985 - 40339095
Alignment:
| Q |
107 |
atcatccaaaacattgggtgaaaaggtcggcaacacaacaggaggtacaatgttaggtgccaaagta--gggggcatccattagagcatccataagtgaa |
204 |
Q |
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| T |
40338985 |
atcatccaaaacttcaggtgaaacagtcggcaacataacacgaggttcaatgttaggtgccaaagtaaggagggcaccaatggaagcatccataattgaa |
40339084 |
T |
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| Q |
205 |
acagtgcaaaa |
215 |
Q |
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| T |
40339085 |
acagtgtaaaa |
40339095 |
T |
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