View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5233_low_17 (Length: 251)
Name: NF5233_low_17
Description: NF5233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5233_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 33234256 - 33234502
Alignment:
| Q |
1 |
ttaattatggaggcaaatccgcattttgttttgactaatgatacatataatatatttatggcttaccaactctgcaccattatattgagcttaaattaca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33234256 |
ttaattatggaggcaaatccgcattttgttttgactaatgatacatataatatatttatggcttaccaactctgcaccattatattgagcttaaattaca |
33234355 |
T |
|
| Q |
101 |
agaggatcattatattgagctaagtgcatgtttgatattagagtaggtttgtcattttagtaaatctataatgtatatgagttctcttgtttatatatta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |||||||||||| |
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| T |
33234356 |
cgaggatcattatattgagctaagtgcatgtttgatattagagtaggtttgtcattttagtaaatctatcgtgtatacgagttctctcgtttatatatta |
33234455 |
T |
|
| Q |
201 |
ttactcaacactcattttttcattcaatacattacttcatctcactc |
247 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||| |||| |
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|
| T |
33234456 |
ttactcaacactcattttttcattcaatacattacttcttctaactc |
33234502 |
T |
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