View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5233_low_18 (Length: 251)
Name: NF5233_low_18
Description: NF5233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5233_low_18 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 13 - 251
Target Start/End: Complemental strand, 4961213 - 4960975
Alignment:
| Q |
13 |
aatatcgtcattacaccatagagttgaaaatcaaattgtcttatgtcatctttaattcggccaaacaagtgtcacatttacttgttcttaatgtttttat |
112 |
Q |
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| T |
4961213 |
aatatcgtcattacaccataaagttgaaaatcaaattgtcttatgtcatctttaattcggccaaacaagtgtcacatttacttgttcttaatgtttttat |
4961114 |
T |
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| Q |
113 |
gcgtttatgaatgtttgtaaatctatgtatgtgttggatgattattaaccataacttttgatacgtgatctatgacagttgttcgaatgataacagtttt |
212 |
Q |
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| T |
4961113 |
gtgtttatgaatgtttgtaaatctatgtatgtgttggatgattattagccataattttttatacgtgatctatgacagttgttcgaatgataatagtttt |
4961014 |
T |
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| Q |
213 |
agagatattgtattaccaatttcgtgacatttaaattaa |
251 |
Q |
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| T |
4961013 |
agacatattgtattaccaatttcgtgacatttaagttaa |
4960975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 94 - 181
Target Start/End: Original strand, 40649250 - 40649337
Alignment:
| Q |
94 |
ttgttcttaatgtttttatgcgtttatgaatgtttgtaaatctatgtatgtgttggatgattattaaccataacttttgatacgtgat |
181 |
Q |
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| T |
40649250 |
ttgttattaatgtttttatacgttaacgaatgttaataaatcaatgtatgtgttggacgattattaactatatattttgatacatgat |
40649337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 173
Target Start/End: Original strand, 34845732 - 34845798
Alignment:
| Q |
107 |
ttttatgcgtttatgaatgtttgtaaatctatgtatgtgttggatgattattaaccataacttttga |
173 |
Q |
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| T |
34845732 |
ttttatgcatttatgaatgttcataaatcgatttatgttttgaatgattattaaccttaatttttga |
34845798 |
T |
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