View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5233_low_21 (Length: 237)
Name: NF5233_low_21
Description: NF5233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5233_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 33234174 - 33233953
Alignment:
| Q |
1 |
catcatgataaccaaaagttatgaaaaaatccacctaattttttgtaacaatatgcatgaataattgataatctatagtcttggatggcatctggatttg |
100 |
Q |
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| T |
33234174 |
catcatgataaccaaaagttatgaaaaaatccacctaattttttgtaacaatatgcatgaataattgataatctatagccttggatggcatctggatttg |
33234075 |
T |
|
| Q |
101 |
acaagttgcagaaaggtgtggctgatacttgctgatggttacatcaatggtagatttgcaagccaaatggcagcatgaagttcataatttgtccagtagc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33234074 |
acaagttgcagaaaggtgtggctgatacttgctgatggttacatcaatggtagatttgcaagccaaatggcagcatgaagttcataatttgtccagtagc |
33233975 |
T |
|
| Q |
201 |
aattgtccacttatgaaattac |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
33233974 |
aattgtccacttatgaaattac |
33233953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 178
Target Start/End: Original strand, 10539237 - 10539268
Alignment:
| Q |
147 |
atggtagatttgcaagccaaatggcagcatga |
178 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
10539237 |
atggtagatttgcaagccaaatggcagcatga |
10539268 |
T |
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