View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5233_low_22 (Length: 208)
Name: NF5233_low_22
Description: NF5233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5233_low_22 |
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Alignment Details
Target: chr8 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 20 - 202
Target Start/End: Complemental strand, 4328862 - 4328680
Alignment:
| Q |
20 |
ctaatacaaaattacatatattacttaattattatgaaaatgtcnnnnnnnttcgtagtaaaatatggagggagtatttttgttggtggtcatttagcat |
119 |
Q |
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| T |
4328862 |
ctaatacaaaattacatatattacttaattattatgaaaatgtcaaaaaaattcgtagtaaaatacggagggagtatttttgttggtggtcatttagcat |
4328763 |
T |
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| Q |
120 |
agaaaatggcaatcacatgcgatttgaattaaacatgtttataattcattttcggcatagaatttcatgaaatttggcaaaag |
202 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4328762 |
agaaaatggcaatcacatgcgatttgaattaaacatgtttataattcattttcggcatagaatttcatgaaatttggcaaaag |
4328680 |
T |
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