View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5233_low_23 (Length: 205)
Name: NF5233_low_23
Description: NF5233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5233_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 47879640 - 47879834
Alignment:
| Q |
1 |
cagtaaaagttgagtttcaatatgagagggaaaagtatgttgaatttgtgaaagctgttaaggattgcaaggctgagagaattgatacaaaatgtctcgc |
100 |
Q |
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| T |
47879640 |
cagtaaaagttgagtttcaatatgagagggaaaagtatgttgaatttgtgaaagctgttaaggattgcaaggctgagagaattgatacaaaatgtctcgc |
47879739 |
T |
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| Q |
101 |
gaaaagagtgaaggaactatttaaagggcatacaaatttaatttttggatttaacaactttctgccaaagaaatatcaaattggtactgatgatg |
195 |
Q |
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| T |
47879740 |
gaaaagagtgaaggaactatttaaagggcatacaaatttaatttttggatttaacaactttctgccaaagaaatatcaaatcagtactgatgatg |
47879834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 47881638 - 47881470
Alignment:
| Q |
1 |
cagtaaaagttgagtttcaatatgagagggaaaagtatgttgaatttgtgaaagctgttaaggattgcaaggctgagagaattgatacaaaatgtctcgc |
100 |
Q |
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| T |
47881638 |
cagtaagagttgagtttcaagatgagatggaaaagtatgatgaatttttaaatgttatgaaagaattcaaggctaggagaattgatactggtggtctcgt |
47881539 |
T |
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| Q |
101 |
gaaaagagtgaaggaactatttaaagggcatacaaatttaatttttggatttaacaactttctgccaaa |
169 |
Q |
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| T |
47881538 |
agaaagagtgaaggtgctgcttaaagggcatacaaatttaatcttgggattcaacaccttcttgccaaa |
47881470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 3 - 169
Target Start/End: Original strand, 47879405 - 47879571
Alignment:
| Q |
3 |
gtaaaagttgagtttcaatatgagagggaaaagtatgttgaatttgtgaaagctgttaaggattgcaaggctgagagaattgatacaaaatgtctcgcga |
102 |
Q |
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| T |
47879405 |
gtaaaagacgagtttcaagatgagatagaaaagtatgatgaatttttaaatgttatgaaggatttcaaggctatgagaattgatacaaatggtgtcatag |
47879504 |
T |
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| Q |
103 |
aaagagtgaaggaactatttaaagggcatacaaatttaatttttggatttaacaactttctgccaaa |
169 |
Q |
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| T |
47879505 |
caagattgaaggatttgtttaaagggcataaaaatttaattttaggattcaacatcttcgtgccaaa |
47879571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 60 - 160
Target Start/End: Complemental strand, 532720 - 532620
Alignment:
| Q |
60 |
aaggattgcaaggctgagagaattgatacaaaatgtctcgcgaaaagagtgaaggaactatttaaagggcatacaaatttaatttttggatttaacaact |
159 |
Q |
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||||||| ||||||| ||||||||||||| || ||||| ||||||| ||||| | ||||||||||||||| |||||||||| ||||| ||||||| |
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| T |
532720 |
aaggatttcaaggcttgtagaattgatacaagtggtgtcgcggaaagagtcaaggatttgtttaaagggcatacagatttaattttgggattcaacaact |
532621 |
T |
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| Q |
160 |
t |
160 |
Q |
| |
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| |
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| T |
532620 |
t |
532620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 156
Target Start/End: Complemental strand, 565303 - 565207
Alignment:
| Q |
60 |
aaggattgcaaggctgagagaattgatacaaaatgtctcgcgaaaagagtgaaggaactatttaaagggcatacaaatttaatttttggatttaaca |
156 |
Q |
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||||||| ||||||| ||||||||||||| || ||||| ||||||| |||| | ||||||||||||||| |||||||||| ||||| |||| |
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| T |
565303 |
aaggatttcaaggcttgtagaattgatacaagtggtgtcgcggaaagagtcaagggtttgtttaaagggcatacagatttaattttgggattcaaca |
565207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 103 - 170
Target Start/End: Complemental strand, 26214723 - 26214656
Alignment:
| Q |
103 |
aaagagtgaaggaactatttaaagggcatacaaatttaatttttggatttaacaactttctgccaaag |
170 |
Q |
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| T |
26214723 |
aaagagtgaaggagctgtttaaagggcataaagatttgattttgggatttaacacctttttgccaaag |
26214656 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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