View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5233_low_4 (Length: 540)
Name: NF5233_low_4
Description: NF5233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5233_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 214 - 521
Target Start/End: Original strand, 30898234 - 30898544
Alignment:
| Q |
214 |
ctttacgggtttcgcttaggtcaaaagattatacatatttgcttttnnnnnnnttatatatgttcatcaatatccctgtcttttttgatccttgtataat |
313 |
Q |
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| T |
30898234 |
ctttacgggtttcgcttaggtcaaaagattatacatatttgcttttaaaaaaattatatatgttcatcaatatcagtgtcttttttgatccgcatataat |
30898333 |
T |
|
| Q |
314 |
ttttataatatgataggagatgaataatagtgtctttcaaaatacaacttcagatccttctgtcctcattgagaaagttgctaaatttattcctgtggct |
413 |
Q |
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|||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||||||||| ||||||| |
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| T |
30898334 |
ttttataatatggaaggagatgaataatcgtgtctttcaaaatacagcttcagatccttatgtcctcattgagaaagttgttaaatttattcttgtggct |
30898433 |
T |
|
| Q |
414 |
gaaatcaaaacagttgtcgtttaa---ttgttatcatgactggtggaaacatttgctcatttgtatggatgtcaacgtgtaatttattttggctgttctt |
510 |
Q |
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|||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
30898434 |
gaaatcaaaacagttgtcgtttaacttttgttatcatgattggtggaaacatttgctcatttgtatggatgtcaacatgtaatttattttggctgttctt |
30898533 |
T |
|
| Q |
511 |
ttgatggttct |
521 |
Q |
| |
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||||||||||| |
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| T |
30898534 |
ttgatggttct |
30898544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 30898005 - 30898129
Alignment:
| Q |
1 |
actgtaatctatccccattaaacaagtacgttgaactgctttgagcaccaataaggcacgataaatgagcccttgaaaatgtgggttcatttgatgtaat |
100 |
Q |
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| T |
30898005 |
actgtaatctatctccattaaacaagtacgttgaactgctttgagcaccaataaggcacgataaatgagcccttgaaaatgtgggttcatttgatgtaat |
30898104 |
T |
|
| Q |
101 |
tattcgtttacaatttggtatatcc |
125 |
Q |
| |
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||||||||||| ||||||||||||| |
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| T |
30898105 |
tattcgtttacgatttggtatatcc |
30898129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 4e-21; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 343 - 507
Target Start/End: Original strand, 5539850 - 5540019
Alignment:
| Q |
343 |
gtgtctttcaaaatacaacttcagatccttctgtcctcattgagaaagtt--gctaaatttattcctgtggctgaaatcaaaacagttgtcgttta---a |
437 |
Q |
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|||||||||||||||| ||| |||||||| | |||||||| |||||| || |||||||||| ||||| |||||||||||||| |||| |||| | |
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| T |
5539850 |
gtgtctttcaaaatacggtttctaatccttctattctcattgaaaaagttaagccaaatttattcttgtggttgaaatcaaaacaggtgtcctttagcta |
5539949 |
T |
|
| Q |
438 |
ttgttatcatgactggtggaaacatttgctcatttgtatggatgtcaacgtgtaatttattttggctgtt |
507 |
Q |
| |
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| T |
5539950 |
taattatcatgactggtggaaacatccgcttctttgtatggatgttcacgtataatttattttgcctgtt |
5540019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 347 - 493
Target Start/End: Complemental strand, 32487468 - 32487317
Alignment:
| Q |
347 |
ctttcaaaatacaacttcagatccttctgtcctcattgagaaagtt--gctaaatttattcctgtggctgaaatcaaaacagttgtcgtttaatt---gt |
441 |
Q |
| |
|
|||||||||||| |||| |||||||| | ||||||| |||||| |||||||| |||| ||||||||||||||||||| |||| ||||| | || |
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| T |
32487468 |
ctttcaaaatacggcttctaatccttctattatcattgaaaaagttaagctaaattcattcttgtggctgaaatcaaaacatgtgtcatttaactacagt |
32487369 |
T |
|
| Q |
442 |
tatcatgactggtggaaacatttgctcatttgtatggatgtcaacgtgtaat |
493 |
Q |
| |
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|||||||| ||||| |||||| |||||||||||||| |||| |||| |||| |
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| T |
32487368 |
tatcatgattggtgcaaacatccgctcatttgtatgggtgtccacgtttaat |
32487317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 344 - 493
Target Start/End: Original strand, 26159656 - 26159809
Alignment:
| Q |
344 |
tgtctttcaaaatacaacttcagatccttctgtcctcattgagaaagtt--gctaaatttattcctgtggctgaaatcaaaacagttgtcgtttaatt-- |
439 |
Q |
| |
|
|||||||||||||| |||| |||||||| | |||||||| |||||| |||||||| |||| ||||| |||||||| |||| |||| |||| || |
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| T |
26159656 |
tgtctttcaaaataaggcttctaatccttctattctcattgaaaaagttaagctaaattcattcttgtggttgaaatcataacatgtgtcatttagttat |
26159755 |
T |
|
| Q |
440 |
-gttatcatgactggtggaaacatttgctcatttgtatggatgtcaacgtgtaat |
493 |
Q |
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||||||||||||||||||||||| |||| ||| ||||| |||| ||||||||| |
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| T |
26159756 |
agttatcatgactggtggaaacatccgctcctttatatgggtgtc-acgtgtaat |
26159809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 438 - 494
Target Start/End: Complemental strand, 32831547 - 32831491
Alignment:
| Q |
438 |
ttgttatcatgactggtggaaacatttgctcatttgtatggatgtcaacgtgtaatt |
494 |
Q |
| |
|
||||||||||||||||| |||||| | | | |||||||||||||| |||||||||| |
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| T |
32831547 |
ttgttatcatgactggtagaaacactcgtttctttgtatggatgtccacgtgtaatt |
32831491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 344 - 392
Target Start/End: Original strand, 25822222 - 25822270
Alignment:
| Q |
344 |
tgtctttcaaaatacaacttcagatccttctgtcctcattgagaaagtt |
392 |
Q |
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||||||||||||||| ||||| ||||||||| ||||||||||||||| |
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| T |
25822222 |
tgtctttcaaaatacggcttcacctccttctgttctcattgagaaagtt |
25822270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 346 - 462
Target Start/End: Original strand, 17405093 - 17405214
Alignment:
| Q |
346 |
tctttcaaaatacaacttcagatccttctgtcctcattgagaaagtt--gctaaatttattcctgtggctgaaatcaaaacagttgtcgtttaatt---g |
440 |
Q |
| |
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||||| ||||||| |||||||||| || || |||||||| || ||| |||||||| |||| ||||| ||||||||||||| |||||| |||| | |
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| T |
17405093 |
tctttaaaaatacggcttcagatccatcagttctcattgataaggttaagctaaattcattcttgtggatgaaatcaaaacatgcgtcgttcaattatag |
17405192 |
T |
|
| Q |
441 |
ttatcatgactggtggaaacat |
462 |
Q |
| |
|
|| |||||||||||||| |||| |
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| T |
17405193 |
ttttcatgactggtggagacat |
17405214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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