View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5233_low_5 (Length: 490)
Name: NF5233_low_5
Description: NF5233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5233_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 327; Significance: 0; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 331
Target Start/End: Original strand, 39848259 - 39848589
Alignment:
| Q |
1 |
actaagtatcagcttgatataaatgacatgagcagattcaacatgtaacataaatgaggggtaaaagtcataaattatgaagcttaaagcagatatataa |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39848259 |
actaagtatcagcttgatataaatgacatgagcagattcaacatgtaacataaatgaggggtaaaagtcataaattatgaagcttaaagcagatatataa |
39848358 |
T |
|
| Q |
101 |
gcaacaatcagagatgaaaaagtcataaattatgatgcttaaagcggctatatgagcaaaacaatattgaaaagtttcaagcaattttgtgaatttacag |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39848359 |
gcaacaatcagagatgaaaaagtcataaattatgatgcttaaagcggctatatgagcaaaacaatattgaaaagtttcaagcaattttgtgaatttacag |
39848458 |
T |
|
| Q |
201 |
attgtgcttcatcgatgtgtgtcaaaagccgagatggtcgacatgtatggttttcacgcttttcccataaccaaaagcgcgggaattgagctggtatgcc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
39848459 |
attgtgcttcatcgatgtgtgtcaaaagccgagatggtcgacatgtatggttttcacgcttttcccataaccaaaagcgctggaattgagctggtatgcc |
39848558 |
T |
|
| Q |
301 |
aaactctttagcaacattttcctacatatca |
331 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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| T |
39848559 |
aaactctttagcaacattttcctacatatca |
39848589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 102 - 315
Target Start/End: Original strand, 39858114 - 39858327
Alignment:
| Q |
102 |
caacaatcagagatgaaaaagtcataaattatgatgcttaaagcggctatatgagcaaaacaatattgaaaagtttcaagcaattttgtgaatttacaga |
201 |
Q |
| |
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|||||| ||||||||||||||||||||| ||||| |||| ||| || ||||||||||||||||||||||||| |||||||||| | |||| ||||||| |
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| T |
39858114 |
caacaaccagagatgaaaaagtcataaaatatgaagcttgaaggggatatatgagcaaaacaatattgaaaaacttcaagcaatctcatgaacttacaga |
39858213 |
T |
|
| Q |
202 |
ttgtgcttcatcgatgtgtgtcaaaagccgagatggtcgacatgtatggttttcacgcttttcccataaccaaaagcgcgggaattgagctggtatgcca |
301 |
Q |
| |
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|| |||||| ||||||| ||||||| ||||| |||||||| ||||| |||| ||||||||| ||| | |||||||||| ||||||||||| |||||||| |
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| T |
39858214 |
ttttgcttcctcgatgtatgtcaaaggccgatatggtcgatatgtaccgtttacacgctttttccaaatccaaaagcgctggaattgagctagtatgcca |
39858313 |
T |
|
| Q |
302 |
aactctttagcaac |
315 |
Q |
| |
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|||||| ||||||| |
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| T |
39858314 |
aactctctagcaac |
39858327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 372 - 473
Target Start/End: Original strand, 39848630 - 39848731
Alignment:
| Q |
372 |
aacagatgggtgcaataatcatcacataattcataagttataatataaattacaaaacaaatgcataaaaaccacaagattcgtgtgacgtatgttgttc |
471 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39848630 |
aacagatgggtgcaataatcatcacataattcataagttataatataaattacaaaacaaatgcataaaaaccacaagattcgtgtgacgtatgttgttc |
39848729 |
T |
|
| Q |
472 |
tt |
473 |
Q |
| |
|
|| |
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|
| T |
39848730 |
tt |
39848731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 190 - 304
Target Start/End: Original strand, 39899071 - 39899185
Alignment:
| Q |
190 |
tgaatttacagattgtgcttcatcgatgtgtgtcaaaagccgagatggtcgacatgtatggttttcacgcttttcccataaccaaaagcgcgggaattga |
289 |
Q |
| |
|
||||||||||| | |||||| || |||| ||||||| ||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |
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|
| T |
39899071 |
tgaatttacaggtcctgcttcctcaatgtttgtcaaaggccgagaaggtcgacatgtatggttttgacgcttttcccataaccaaaagcgctggaattga |
39899170 |
T |
|
| Q |
290 |
gctggtatgccaaac |
304 |
Q |
| |
|
||||||||||||||| |
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|
| T |
39899171 |
gctggtatgccaaac |
39899185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 149 - 331
Target Start/End: Original strand, 39865484 - 39865666
Alignment:
| Q |
149 |
tatatgagcaaaacaatattgaaaagtttcaagcaattttgtgaatttacagattgtgcttcatcgatgtgtgtcaaaagccgagatggtcgacatgtat |
248 |
Q |
| |
|
||||| ||||||| |||||||| ||| |||||| || || ||||||||||| | |||||| || ||| ||||||| | ||| |||| |||||||||| |
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|
| T |
39865484 |
tatatcagcaaaataatattgataagcttcaagagatcttatgaatttacaggtcctgcttcctcaatgcgtgtcaacggacgaaatggacgacatgtat |
39865583 |
T |
|
| Q |
249 |
ggttttcacgcttttcccataaccaaaagcgcgggaattgagctggtatgccaaactctttagcaacattttcctacatatca |
331 |
Q |
| |
|
||||||||||||| | ||| |||||||||| |||||||||||||||||| ||||||||||||||| | ||||||||||||| |
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|
| T |
39865584 |
cgttttcacgctttgcaaatacccaaaagcgctggaattgagctggtatgcaaaactctttagcaacctcttcctacatatca |
39865666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 195 - 331
Target Start/End: Original strand, 37466958 - 37467094
Alignment:
| Q |
195 |
ttacagattgtgcttcatcgatgtgtgtcaaaagccgagatggtcgacatgtatggttttcacgcttttcccataaccaaaagcgcgggaattgagctgg |
294 |
Q |
| |
|
|||||||||||||||| || || |||||||| | ||| || ||| |||||||||||| ||||||| |||||| |||||||||| |||||||| | || |
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|
| T |
37466958 |
ttacagattgtgcttcctcaatttgtgtcaatggacgattaggacgatatgtatggttttgacgctttgcccatagccaaaagcgctggaattgaacagg |
37467057 |
T |
|
| Q |
295 |
tatgccaaactctttagcaacattttcctacatatca |
331 |
Q |
| |
|
|||||| |||||||||||||| | ||||||||||||| |
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| T |
37467058 |
tatgccgaactctttagcaacctcttcctacatatca |
37467094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 391 - 473
Target Start/End: Original strand, 39858344 - 39858427
Alignment:
| Q |
391 |
catcacataattcataagttataatataaattacaaaa-caaatgcataaaaaccacaagattcgtgtgacgtatgttgttctt |
473 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||||||| |||| |||||||||||||||||||| | ||||||||||| ||||| |
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| T |
39858344 |
catcacaaaattcttaagttataatataaattacaaaaccaaaagcataaaaaccacaagattcatatgacgtatgtttttctt |
39858427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 192 - 331
Target Start/End: Original strand, 39912107 - 39912246
Alignment:
| Q |
192 |
aatttacagattgtgcttcatcgatgtgtgtcaaaagccgagatggtcgacatgtatggttttcacgcttttcccataaccaaaagcgcgggaattgagc |
291 |
Q |
| |
|
||||||||| | |||||| || |||| |||||| ||||| |||| ||| ||||||||||| ||||||| |||||| |||||||||| ||||| |||| |
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|
| T |
39912107 |
aatttacaggtgctgcttcctcaatgtatgtcaatggccgaaatggacgatatgtatggtttagacgctttgcccatagccaaaagcgctggaatcgagc |
39912206 |
T |
|
| Q |
292 |
tggtatgccaaactctttagcaacattttcctacatatca |
331 |
Q |
| |
|
|||||||| |||||||| ||||| | ||||||||||||| |
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|
| T |
39912207 |
cggtatgccgaactctttggcaacctcttcctacatatca |
39912246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 261 - 328
Target Start/End: Complemental strand, 38968028 - 38967961
Alignment:
| Q |
261 |
tttcccataaccaaaagcgcgggaattgagctggtatgccaaactctttagcaacattttcctacata |
328 |
Q |
| |
|
||||||||| | |||||||| |||||||||||||||||||||||||||||||||| | |||||||||| |
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|
| T |
38968028 |
tttcccatagctaaaagcgctggaattgagctggtatgccaaactctttagcaacctcttcctacata |
38967961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 3 - 54
Target Start/End: Original strand, 39858059 - 39858110
Alignment:
| Q |
3 |
taagtatcagcttgatataaatgacatgagcagattcaacatgtaacataaa |
54 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||||||||||| |||||||| |
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|
| T |
39858059 |
taagtatcagcttgatatagatgtcatgagcagattcaacattaaacataaa |
39858110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 245 - 315
Target Start/End: Complemental strand, 36058420 - 36058350
Alignment:
| Q |
245 |
gtatggttttcacgcttttcccataaccaaaagcgcgggaattgagctggtatgccaaactctttagcaac |
315 |
Q |
| |
|
|||||||||| |||||| |||| | |||||||||| | |||||| ||||||| ||||||||||| ||||| |
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|
| T |
36058420 |
gtatggttttgacgcttagcccacagccaaaagcgctgaaattgaactggtataccaaactcttttgcaac |
36058350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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