View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5233_low_7 (Length: 464)
Name: NF5233_low_7
Description: NF5233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5233_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 394; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 16 - 451
Target Start/End: Original strand, 299112 - 299546
Alignment:
| Q |
16 |
caagtggaatctaagaaaggaagaaagaaacactactccattggcgctcataattgatgaaaccagtttggtttgtatcttggagaaggagctggagtca |
115 |
Q |
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| T |
299112 |
caagtggaatctaagaaaggaagaaagaaacactactccattggcgctcataattgatgaaaccagtttggtttgtatcttggagaaggagctggagtca |
299211 |
T |
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| Q |
116 |
gaggtaagattatgcctccttatatgaagttttgtttggaatatttttatttgttgaagactaatgcctgggttaatttaggtacatgtacaaatgtttt |
215 |
Q |
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| T |
299212 |
gaggtaagattatgcctcctcatatgaagttttgtttggaatatttttatctgctgaagactaatgcctgggttaatttaggtacatgtacaaatgtttt |
299311 |
T |
|
| Q |
216 |
agatggattactaactggtttcccctttcctttcaacagcttcagatttttctgtggggcaatttcagtttttgnnnnnnntcacttttggttcatgggc |
315 |
Q |
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| T |
299312 |
agatggattactaactggtttcccctttcctttcaacagcttcagatttttctgtggcgcaatttcagtttttg-aaaaaatcacttttggttcatgggc |
299410 |
T |
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| Q |
316 |
acttgaattatcagtatgttgtttatttagttttgtataatttagcttctaacacaatgctgtctttgttttgattctattctggtgtgtacagttttct |
415 |
Q |
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| T |
299411 |
acttgaattatcagtatgttgtttatttagttttgtataatttagcttctaacacaatgctgtctttgttttgattctattctggtgtgtacagttttct |
299510 |
T |
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| Q |
416 |
ttcaacgctattgtctcaatcatctttgttttaact |
451 |
Q |
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| T |
299511 |
ttcaacgctattgtctcaatcatctttgttttaact |
299546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 43 - 254
Target Start/End: Original strand, 301302 - 301514
Alignment:
| Q |
43 |
aaacactactccattggcgctcataattgatgaaaccagtttggtttgtatcttggagaaggagctggagtcagaggtaagattatgcctccttatatg- |
141 |
Q |
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|||||||||||||||||| ||||||||||||| |||||||||||| | || ||||||||| || ||||||||||||| || ||||| | || ||||||| |
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| T |
301302 |
aaacactactccattggcactcataattgatggaaccagtttggtctataccttggagaaagaactggagtcagaggcaatattatccttctttatatga |
301401 |
T |
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| Q |
142 |
aagttttgtttggaatatttttat-ttgttgaagactaatgcctgggttaatttaggtacatgtacaaatgttttagatggattactaactggtttcccc |
240 |
Q |
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|| ||||||||| ||||||||||| || | ||| |||||||| ||||||||||| ||| ||| | ||| |||||||||| || |||||||| |||| || |
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| T |
301402 |
aatttttgtttgaaatatttttatattttggaaaactaatgcttgggttaattt-ggtgcatattcaactgttttagattgaatactaactagtttacca |
301500 |
T |
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| Q |
241 |
tttcctttcaacag |
254 |
Q |
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| T |
301501 |
tctcctttcaacag |
301514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 52 - 122
Target Start/End: Complemental strand, 27465193 - 27465123
Alignment:
| Q |
52 |
tccattggcgctcataattgatgaaaccagtttggtttgtatcttggagaaggagctggagtcagaggtaa |
122 |
Q |
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||||||||| ||||||||||||| | |||||||||| ||| ||||||||||| ||||||||||||||| |
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| T |
27465193 |
tccattggcactcataattgatgggaatagtttggtttatattttggagaaggaattggagtcagaggtaa |
27465123 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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