View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5234-Insertion-1 (Length: 372)
Name: NF5234-Insertion-1
Description: NF5234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5234-Insertion-1 |
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| [»] scaffold0148 (1 HSPs) |
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| [»] scaffold0280 (2 HSPs) |
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Alignment Details
Target: scaffold0148 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: scaffold0148
Description:
Target: scaffold0148; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 10 - 372
Target Start/End: Complemental strand, 27655 - 27293
Alignment:
| Q |
10 |
tccttcaaactgttggatctggacacaaagtttaactactcttaaagaagagtatactagttgggatgatgatcgtagactcattatcctagttgataaa |
109 |
Q |
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| T |
27655 |
tccttcaaactgttggatctggacacacagtttaactactcttaaagaagagtatactagttgggatgatgatcgtagactcattatcctagttgataaa |
27556 |
T |
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| Q |
110 |
ttagacataggtatgcatatgatgattaaattagagacatatttctctcttcnnnnnnnnnnatataaaattagaaacaaattcatgattctgaagattc |
209 |
Q |
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| T |
27555 |
ttagacataggtatgcatatgatgattaaattagagacatatttctctcttcttctttttttatataaaattagaaacaaattcatgattctgaaaattc |
27456 |
T |
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| Q |
210 |
cttttattcatttttgtagaaccaactccaagaacttgtgagccctgtggtacaaacacagtcccttatcctctcagtaccggacccaactgtggagacc |
309 |
Q |
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| T |
27455 |
cttttattcatttttgtagaaccaactccaagaacttgtgagccctgtggtacaaacacagtcccttatcctctcagtaccggacccaactgtggagacc |
27356 |
T |
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| Q |
310 |
tcgcatacttcaactttagatgcaatactacaacgggccaaggtcaccttagcttcacggccg |
372 |
Q |
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| T |
27355 |
tcgcatacttcaactttagatgcaataccacaacaggccaaggtcaccttagcttcacggccg |
27293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0280 (Bit Score: 101; Significance: 6e-50; HSPs: 2)
Name: scaffold0280
Description:
Target: scaffold0280; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 12 - 144
Target Start/End: Complemental strand, 2617 - 2485
Alignment:
| Q |
12 |
cttcaaactgttggatctggacacaaagtttaactactcttaaagaagagtatactagttgggatgatgatcgtagactcattatcctagttgataaatt |
111 |
Q |
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| T |
2617 |
cttcaaattgttggatctggacacaaagtttaactactcttaaagaagagtatactaattgggattatgatcgtagactcattgtcctagttgataaatc |
2518 |
T |
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| Q |
112 |
agacataggtatgcatatgatgattaaattaga |
144 |
Q |
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| T |
2517 |
agaggtaggtatgcatgtgatgattaaattaga |
2485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0280; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 201 - 334
Target Start/End: Complemental strand, 2307 - 2174
Alignment:
| Q |
201 |
tgaagattccttttattcatttttgtagaaccaactccaagaacttgtgagccctgtggtacaaacacagtcccttatcctctcagtaccggacccaact |
300 |
Q |
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| T |
2307 |
tgaagattccttttattgatatttgcagcaccaactccaagaacttgtgagccttgtggtacaaacacagtcccttatcctctcaataccagacccatct |
2208 |
T |
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| Q |
301 |
gtggagacctcgcatacttcaactttagatgcaa |
334 |
Q |
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| T |
2207 |
gtgcagacttcacatacttcaactttagatgcaa |
2174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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