View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5234-Insertion-2 (Length: 350)

Name: NF5234-Insertion-2
Description: NF5234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5234-Insertion-2
NF5234-Insertion-2
[»] chr7 (3 HSPs)
chr7 (8-350)||(40108436-40108764)
chr7 (10-181)||(40146342-40146512)
chr7 (10-209)||(40152946-40153144)


Alignment Details
Target: chr7 (Bit Score: 267; Significance: 1e-149; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 8 - 350
Target Start/End: Original strand, 40108436 - 40108764
Alignment:
Q  8 ttttccccaccttgatagctcaaccatagaaaactacataatgacaaacatagggaaaccaacatgatcacgacgaatgtttggaacgagatgtgaggtg 107  Q
    |||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40108436 ttttccccaccttgatag-tcaaccatagaaaactacataatgtcaaacatagggaaaccaacatgatcacgacgaatgtttggaacgagatgtgaggtg 40108534  T
Q  108 ccaaaaagaacaccatagcaatcgtagcactttgccatatcttcaactgtgcaaaagccccttcctacaccacaaagtaacataaacttcacataataga 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40108535 ccaaaaagaacaccatagcaatcgtagcactttgccatatcttcaactgtgcaaaagccccttcctacaccacaaagtaacataaacttcacataataga 40108634  T
Q  208 tagctcaatgcatatttgaaattactacgagtttgatgaaatcacgacttcaccgtaacttcgttgaaagtaatcatatatttgctctatgtgattccac 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||             || |||    
T  40108635 tagctcaatgcatatttgaaattactacgagtttgatgaaatcacgacttcaacgtaactttgttgaaagtaatcatatat-------------tttcac 40108721  T
Q  308 aaacttgcgataaatccatgttaattgtacatgatttgagttt 350  Q
    |||||||| |||||||||||||| |||||||||||||||||||    
T  40108722 aaacttgcaataaatccatgttacttgtacatgatttgagttt 40108764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 10 - 181
Target Start/End: Original strand, 40146342 - 40146512
Alignment:
Q  10 ttccccaccttgatagctcaaccatagaaaactacataatgacaaacatagggaaaccaacatgatcacgacgaatgtttggaacgagatgtgaggtgcc 109  Q
    ||||||||||||| ||| |||||||||||||||||| |||||||| |||||  ||||||||||||| | |   | || ||||||||| ||||  || |||    
T  40146342 ttccccaccttgagagc-caaccatagaaaactacagaatgacaagcatagtaaaaccaacatgattatggtaactgcttggaacgaaatgtacggggcc 40146440  T
Q  110 aaaaagaacaccatagcaatcgtagcactttgccatatcttcaactgtgcaaaagccccttcctacaccaca 181  Q
    ||||||||||| | |||||| ||||| |||||||||||||| | |||||||||||||||||||| |||||||    
T  40146441 aaaaagaacacgacagcaattgtagcgctttgccatatctttagctgtgcaaaagccccttcctgcaccaca 40146512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 10 - 209
Target Start/End: Original strand, 40152946 - 40153144
Alignment:
Q  10 ttccccaccttgatagctcaaccatagaaaactacataatgacaaacatagggaaaccaacatgatcacgacgaatgtttggaacgagatgtgaggtgcc 109  Q
    ||||||||||||| ||| |||||||| |||||| || |||||||| |||||  ||  |||||||| || ||  | || ||||||||| ||||  || |||    
T  40152946 ttccccaccttgagagc-caaccataaaaaactgcagaatgacaagcatagtaaagtcaacatgaccatgataactgcttggaacgaaatgtacggggcc 40153044  T
Q  110 aaaaagaacaccatagcaatcgtagcactttgccatatcttcaactgtgcaaaagccccttcctacaccacaaagtaacataaacttcacataatagata 209  Q
    |||||||||||||||||||| ||||| || ||||||||||| | ||| |||||||||||||||| |||| |||||||| ||||  || |||||| |||||    
T  40153045 aaaaagaacaccatagcaatggtagcgctctgccatatctttagctgagcaaaagccccttcctgcaccgcaaagtaatataagtttgacataagagata 40153144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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