View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5235-Insertion-1 (Length: 130)
Name: NF5235-Insertion-1
Description: NF5235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5235-Insertion-1 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 115; Significance: 8e-59; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 115; E-Value: 8e-59
Query Start/End: Original strand, 5 - 130
Target Start/End: Complemental strand, 49534773 - 49534647
Alignment:
| Q |
5 |
acattttattcctatcattgtgttctacaattttgatttgatcaaggtatgatatagatggcctaattacagctccacacaatatttccaaaaattcaag |
104 |
Q |
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| T |
49534773 |
acattttattcctatcattgtgttctacaactttgatttgatcaaggtatgatatagatggcctaattacagctccacacaatatttccaaaaattcaag |
49534674 |
T |
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| Q |
105 |
acatttgaa-ttttattaatatatctg |
130 |
Q |
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| T |
49534673 |
acatttgaatttttattaatatatctg |
49534647 |
T |
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Target: chr4; HSP #2
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 77 - 116
Target Start/End: Complemental strand, 49108008 - 49107969
Alignment:
| Q |
77 |
ctccacacaatatttccaaaaattcaagacatttgaattt |
116 |
Q |
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| T |
49108008 |
ctccacacaatatttccacaaatataagacatttgaattt |
49107969 |
T |
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