View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5235_high_14 (Length: 300)
Name: NF5235_high_14
Description: NF5235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5235_high_14 |
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Alignment Details
Target: chr2 (Bit Score: 154; Significance: 1e-81; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 15 - 204
Target Start/End: Original strand, 28136311 - 28136503
Alignment:
| Q |
15 |
tcatcaacactaaaaaactaattcaaccaagtaagaaagaaacatgattccaacaaattctactacacaatggtggtgctattcgtcaacactattcaag |
114 |
Q |
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| T |
28136311 |
tcatcaacactaaaaaactaattcaaccaagtaagaaagaaacaagattccaacaaattctactacacaatggtggtgctattcgtcaacactattcaag |
28136410 |
T |
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| Q |
115 |
actgaattattgaattttttcactaaacctacacgattgaaaataaa--cttgcaaatataatttgactac-aaaaaagagtgaaatcataca |
204 |
Q |
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| T |
28136411 |
actgaattgttgaattttgtcactgaacctagacgattgaaaataaactcttgcaaatataatttgactacaaaaaaagagtgaaatcataca |
28136503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 74; Significance: 6e-34; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 68 - 190
Target Start/End: Complemental strand, 44806263 - 44806139
Alignment:
| Q |
68 |
caaattctactacacaatggtggtgctattcgtcaacactattcaagactgaattattgaattttttcactaaacctacacgattgaaaataaa--cttg |
165 |
Q |
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| T |
44806263 |
caaattctactacacgatggcgccgctattcgtcaacactgttcaagactgaattgttgaattttgtcactaaacctagacgattgaaaataaactcttg |
44806164 |
T |
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| Q |
166 |
caaatataatttgactacaaaaaag |
190 |
Q |
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| T |
44806163 |
caagtagaatttgactacaaaaaag |
44806139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 62
Target Start/End: Complemental strand, 44806523 - 44806481
Alignment:
| Q |
20 |
aacactaaaaaactaattcaaccaagtaagaaagaaacatgat |
62 |
Q |
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| T |
44806523 |
aacactaaaaaactaattcaaccaagtaagaaagaaacatgat |
44806481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 203 - 271
Target Start/End: Complemental strand, 8450858 - 8450790
Alignment:
| Q |
203 |
cagtcagtgatttgtgagtattaagtaacatgtaatctatttggtattgttttgaatcaatacatgttg |
271 |
Q |
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| T |
8450858 |
cagtcagtgatttgtgagtattaagtaacatgtaatctatttggtattgttttgaatcaatacatgttg |
8450790 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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