View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5235_high_8 (Length: 327)
Name: NF5235_high_8
Description: NF5235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5235_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 317
Target Start/End: Original strand, 30043049 - 30043363
Alignment:
| Q |
1 |
aaggctcaagttaatcataaattgtggaagaaaagttccaataaaaattagttgatcagatttggaatcaaccaccagtattgtattacgagaaaataga |
100 |
Q |
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| T |
30043049 |
aaggctcaagttaatcataaattgtggaagaaaagttccaataaaaattagttgatcagatttggaatcaaccaccagtattgtattacgagaaaataga |
30043148 |
T |
|
| Q |
101 |
gaaattactggtttgtatcacattacaacgctctatggcagtgaatgttcagcggtgaatctttctggtaagacttgacagnnnnnnnnnggtgtagcag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
30043149 |
gaaattactggtttgtatcacattacaacgctctatggcagtgaatgttcagcggtgaatctttctggtaagacttgacagaaaaaaaaaggtgtagcag |
30043248 |
T |
|
| Q |
201 |
atacgacaataaggtaaacgaaaaggagaccgaagattttggaaagacataatccacagaaaagtttgagtaccatctattgaggggaagatggtgcaaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30043249 |
atacgacaataaggtaaacgaaaaggagaccgaagattttggaaagacataatc--cagaaaagtttgagtaccatctattgaggggaagatggtgcaaa |
30043346 |
T |
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| Q |
301 |
ttcgactaaggtctgtg |
317 |
Q |
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|| |||||||||||||| |
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| T |
30043347 |
tttgactaaggtctgtg |
30043363 |
T |
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