View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5235_low_1 (Length: 423)

Name: NF5235_low_1
Description: NF5235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5235_low_1
NF5235_low_1
[»] chr6 (4 HSPs)
chr6 (183-344)||(2996224-2996386)
chr6 (345-411)||(2996414-2996480)
chr6 (372-411)||(2980098-2980137)
chr6 (376-411)||(2983974-2984009)
[»] scaffold0011 (1 HSPs)
scaffold0011 (185-256)||(13415-13486)
[»] chr4 (1 HSPs)
chr4 (370-411)||(38885789-38885830)


Alignment Details
Target: chr6 (Bit Score: 123; Significance: 5e-63; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 183 - 344
Target Start/End: Original strand, 2996224 - 2996386
Alignment:
Q  183 acaatagcacattggagcaatcaatacaagatagtggcaagcaaaagcaaattacacttctccaaaagtcacgaacaca-gaggtccaccaaggcaaaag 281  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| | || |||| ||||||||||    
T  2996224 acaatagcacattggagcaatcaatacaagctagtggcaagcaaaagcaaatcacacttctccaaaagtcacgaacacatggggcccacaaaggcaaaag 2996323  T
Q  282 gagatgaaagatttcataaagagacgccttcttgaaaactccaaaaaactaccaccaccaacc 344  Q
    |||| |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  2996324 gagacgaaagattccataaagagacgccttcttgaaaactctaaaaaactaccaccaccaacc 2996386  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 345 - 411
Target Start/End: Original strand, 2996414 - 2996480
Alignment:
Q  345 atacacgcagctgcactatatttttgttatgatgggtttgagttgcatggttttgcttatgagccta 411  Q
    |||||||||  |||| | || ||| |||||||||||||||||||||||||| |||||||||||||||    
T  2996414 atacacgcacttgcattctactttggttatgatgggtttgagttgcatggtcttgcttatgagccta 2996480  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 372 - 411
Target Start/End: Complemental strand, 2980137 - 2980098
Alignment:
Q  372 tatgatgggtttgagttgcatggttttgcttatgagccta 411  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  2980137 tatgatgggtttgagttgcatggttttgcttatgaaccta 2980098  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 376 - 411
Target Start/End: Complemental strand, 2984009 - 2983974
Alignment:
Q  376 atgggtttgagttgcatggttttgcttatgagccta 411  Q
    |||||||||||||||||| |||||||||||||||||    
T  2984009 atgggtttgagttgcatgattttgcttatgagccta 2983974  T

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Target: scaffold0011 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 185 - 256
Target Start/End: Original strand, 13415 - 13486
Alignment:
Q  185 aatagcacattggagcaatcaatacaagatagtggcaagcaaaagcaaattacacttctccaaaagtcacga 256  Q
    ||||| |||||| ||||||||| ||||| ||||||||||||||| ||||| |||||||||||||||||||||    
T  13415 aatagaacattgaagcaatcaacacaagctagtggcaagcaaaaacaaatcacacttctccaaaagtcacga 13486  T

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Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 370 - 411
Target Start/End: Complemental strand, 38885830 - 38885789
Alignment:
Q  370 gttatgatgggtttgagttgcatggttttgcttatgagccta 411  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  38885830 gttatgatgggtttgagttgcatggttttgcttatgagccta 38885789  T

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