View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5235_low_2 (Length: 282)
Name: NF5235_low_2
Description: NF5235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5235_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 235658 - 235421
Alignment:
| Q |
1 |
acaataagaccaccatcctcactcgatggccatgtcgtcagccacttcaatcctaaaaaagtggtcgctgtcatgtcccatggaaaaaa-ccctatcatt |
99 |
Q |
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| T |
235658 |
acaataagaccaccgtcctcacccgatggccatgtcgtcagccacttcaatcctaaaatagtggtcgctgtcatgtcccatggaaaaaaaccctatcatt |
235559 |
T |
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| Q |
100 |
gtcggctcattgaactgtactggagaagaaccagtagtgttgaaatgtggcgatgagaattggaaacttattcctggaatgtcggcctatttaggagaca |
199 |
Q |
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| T |
235558 |
gtcggctcgttgaactgtactggagaagaaccagtagtgttgaaatgtggcgatgagaattggaaacttattcctggaatgtcggcctatttaggagaca |
235459 |
T |
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| Q |
200 |
ttcgtgttttcaaaggccagccttatgtggttgataaa |
237 |
Q |
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| T |
235458 |
tccgtgttttcaaaggccagccttatgtggttgataaa |
235421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 80 - 258
Target Start/End: Original strand, 8814023 - 8814204
Alignment:
| Q |
80 |
atggaaaaaaccctatcattgtcggctcattgaactgtactggagaagaacca---gtagtgttgaaatgtggcgatgagaattggaaacttattcctgg |
176 |
Q |
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| T |
8814023 |
atggaaataaacctatcatcgtcgcctcatttaactgtaaaggagaagaacaactggtagtgttcaaatgcggcgatgagaattggaagtttattcctga |
8814122 |
T |
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| Q |
177 |
aatgtcggcctatttaggagacattcgtgttttcaaaggccagccttatgtggttgataaaactgggcggactgttactgtt |
258 |
Q |
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| T |
8814123 |
aatgtcagtctactttggagatatccgtgctttcaaaggtcagtgttatgtggtagacaaaactggacagactgttactgtt |
8814204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 130 - 258
Target Start/End: Original strand, 251114 - 251242
Alignment:
| Q |
130 |
ccagtagtgttgaaatgtggcgatgagaattggaaacttattcctggaatgtcggcctatttaggagacattcgtgttttcaaaggccagccttatgtgg |
229 |
Q |
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||||||||||| ||||| || |||||||||||||| ||| ||| |||||||| ||||| ||||||||| ||||||||||||||| ||||||| || |
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| T |
251114 |
ccagtagtgttcaaatgcggtgatgagaattggaaggctatacctaacatgtcggcttattttggagacatttgtgttttcaaaggccgaccttatgcgg |
251213 |
T |
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| Q |
230 |
ttgataaaactgggcggactgttactgtt |
258 |
Q |
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| T |
251214 |
tagacaatactggacggacagttactgtt |
251242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 123 - 242
Target Start/End: Complemental strand, 247267 - 247148
Alignment:
| Q |
123 |
agaagaaccagtagtgttgaaatgtggcgatgagaattggaaacttattcctggaatgtcggcctatttaggagacattcgtgttttcaaaggccagcct |
222 |
Q |
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|||| |||||| | |||||||||| || |||||||||||||| ||| ||| ||||||| ||||||||||||||| ||||||||||||||| ||| |
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| T |
247267 |
agaacaaccagcattgttgaaatgcggtgatgagaattggaaggctatacctcacatgtcggtttatttaggagacatttgtgttttcaaaggccgacct |
247168 |
T |
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| Q |
223 |
tatgtggttgataaaactgg |
242 |
Q |
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|||| ||| || |||||||| |
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| T |
247167 |
tatgcggtagacaaaactgg |
247148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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