View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5236-Insertion-1 (Length: 425)
Name: NF5236-Insertion-1
Description: NF5236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5236-Insertion-1 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 315; Significance: 1e-177; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 7 - 425
Target Start/End: Original strand, 6947598 - 6948005
Alignment:
| Q |
7 |
aagcagaagaacaaatcaaactaattaaacacgagaacatgaacgtgagcctgttatggaaagattacgtacacatgcactctaatatatgttgctacta |
106 |
Q |
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| T |
6947598 |
aagcagaagaacaaatcaaactaatcaaacacgagaacatgaacgtgagcctgttatggaaagattacgtacacatgcactctaatatatgttgctacta |
6947697 |
T |
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| Q |
107 |
ccatcaannnnnnnnactgaaggaatttccttatgttgatatgcagattcttgagtgcactcaatatttataaaccgaaagaaaaacatgtactaagcat |
206 |
Q |
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| T |
6947698 |
ccatcaattttttttactgaaggaatttccttatgttgatatgcagattcatgagtgcactcaatatatataaaccgaaagaaaaacatgtactaagcat |
6947797 |
T |
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| Q |
207 |
aggtaaatctacaatgcagttcttttcatgatgaaaacgaagtgtaacaaaaaatcccatgttaaaatataataatcaacaaaagcagtggcctcttaac |
306 |
Q |
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| T |
6947798 |
aggtaaatctacaatgcagttc-tttcatgatgaaaacgaagcgtaacataatatcccatgttaaaatataataatcaac-aaagcagtggcc------- |
6947888 |
T |
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| Q |
307 |
tatcttaaccatataaagttttagagactaaaccctagactctaatcagttttcaaaagtgcattgattttcacgacgaacttcctcatcttcctcggga |
406 |
Q |
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| T |
6947889 |
--tcttaaccatataaagttttagagactaaaccctagactctaatcagttttcaaaagtgcattgattttcacaacgaacttcctcatcttccttggga |
6947986 |
T |
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| Q |
407 |
cggtaagcattcacaatgt |
425 |
Q |
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| T |
6947987 |
cggtaagcattcacaatgt |
6948005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 123 - 306
Target Start/End: Original strand, 6950182 - 6950367
Alignment:
| Q |
123 |
ctgaaggaatttccttatgttgatatgcagattcttgagtgcactcaat-atttataaaccgaaagaa--aaacatgtactaagcataggtaaatcta-c |
218 |
Q |
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| T |
6950182 |
ctgaaggaatttgctcatgttgatatgcagattcatgaacgggctcaaacatacataaaccgaaacaacaaaacaagtaataagcatagataaatctaac |
6950281 |
T |
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| Q |
219 |
aatgcagttcttttcatgatgaaaacgaagtgtaacaaaaaatcccatgttaaaatataataatcaacaaaagcagtggcctcttaac |
306 |
Q |
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| T |
6950282 |
aatgcagttcttt-catgatgaaaacgaagcgtaacataatatcccatgttaaaatataataaacaac-aaagcagtggtctcttaac |
6950367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 328 - 359
Target Start/End: Original strand, 6950380 - 6950411
Alignment:
| Q |
328 |
tagagactaaaccctagactctaatcagtttt |
359 |
Q |
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| T |
6950380 |
tagagactaaaccctagactctaatcagtttt |
6950411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 175 - 219
Target Start/End: Complemental strand, 5647896 - 5647852
Alignment:
| Q |
175 |
tataaaccgaaagaaaaacatgtactaagcataggtaaatctaca |
219 |
Q |
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| T |
5647896 |
tataaatcgaaagaaaaacaagtactaagcataaataaatctaca |
5647852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 81; Significance: 5e-38; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 309 - 417
Target Start/End: Original strand, 661917 - 662025
Alignment:
| Q |
309 |
tcttaaccatataaagttttagagactaaaccctagactctaatcagttttcaaaagtgcattgattttcacgacgaacttcctcatcttcctcgggacg |
408 |
Q |
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| T |
661917 |
tcttaaccatataaaattttagagactaaaccctagactctaattagttttcaaaagtgcattgattttcacgacaaacttcatcctcttactccggacg |
662016 |
T |
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| Q |
409 |
gtaagcatt |
417 |
Q |
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| T |
662017 |
gtaagcatt |
662025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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