View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5236-Insertion-2 (Length: 329)
Name: NF5236-Insertion-2
Description: NF5236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5236-Insertion-2 |
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Alignment Details
Target: chr3 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 8 - 322
Target Start/End: Original strand, 34367386 - 34367706
Alignment:
| Q |
8 |
gaaagaagattgtggaaagtgtgaga------aaggtagcaatgaaccctgtagtgttggcatatgattccttccgcgtgtcttgttatgcaaccacaac |
101 |
Q |
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| T |
34367386 |
gaaagaagattgtggaaagtgtgagaaagagaaaggtagcaatgaaccctgtagtgttggcatatgattccttccgcgtgtcttgttatgcaaccacaac |
34367485 |
T |
|
| Q |
102 |
acgcacttcttctcagcaccaccaccgtcctgtttctctatctgtattccaattccaaaaccctaatttcctcacggtgaacactatcttccttaagatg |
201 |
Q |
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| T |
34367486 |
acgcacttcttgtcagcaccaccaccgtcctgtttctctatctgtattccaattccaaaaccctaatttcctcacggggaacactatcttccttaagatg |
34367585 |
T |
|
| Q |
202 |
caggtaattaactaattttacctttttcctcctatttctcattcgttccattccattgcacatttctaatttctctcttcttctaagggtatataacatt |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34367586 |
caggtaattaactaattttacctttttcctcctatttctcattcgttccattccattgcacatttctaatttctctcttcttctaagggtatataacatt |
34367685 |
T |
|
| Q |
302 |
aattagatattgaaacattat |
322 |
Q |
| |
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||||||||||||||||||||| |
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| T |
34367686 |
aattagatattgaaacattat |
34367706 |
T |
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