View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5236-Insertion-5 (Length: 260)
Name: NF5236-Insertion-5
Description: NF5236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5236-Insertion-5 |
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Alignment Details
Target: chr6 (Bit Score: 243; Significance: 1e-135; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 8 - 254
Target Start/End: Complemental strand, 11542296 - 11542050
Alignment:
| Q |
8 |
ggaagggagctcattgtgagggacaacaagagattccatcatttcaaagatggaaaatgctcttgtggagattattggtagtgttggtaaaaatgtagat |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11542296 |
ggaagggagctcattgtgagggacaacaagagattccatcatttcaaagatggaaaatgctcttgtggagattattggtagtgttggtaaaaatgtagat |
11542197 |
T |
|
| Q |
108 |
actctgatgatatattgctagattgtattttgtttgctgccaaaaatctgtaaggttcaaatccatgtttggaaagatgaaagaaatttttattccatct |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11542196 |
actctgatgatatattgctagattgtattttgtttgctgccaaaaatctgtaaggttcaaatccatgtttggaaagatgaaagaaatttttattccatct |
11542097 |
T |
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| Q |
208 |
atgacttaacctgtatagcttattttctttgtcgtgcttgtttgtta |
254 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
11542096 |
atgacttaacctgtatagcttattttctttgtcgtgcatgtttgtta |
11542050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 8 - 254
Target Start/End: Complemental strand, 34614841 - 34614595
Alignment:
| Q |
8 |
ggaagggagctcattgtgagggacaacaagagattccatcatttcaaagatggaaaatgctcttgtggagattattggtagtgttggtaaaaatgtagat |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34614841 |
ggaagggagctcattgtgagggacaacaagagattccatcatttcaaagatggaaaatgctcttgtggagattattggtagtgttggtaaaaatgtagat |
34614742 |
T |
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| Q |
108 |
actctgatgatatattgctagattgtattttgtttgctgccaaaaatctgtaaggttcaaatccatgtttggaaagatgaaagaaatttttattccatct |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
34614741 |
actctgatgatatattgctagattgtattttgtttgctgccaaaaatctgtaaggttcaaatccatgtttggaaagatgaaagaaaattttattccatct |
34614642 |
T |
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| Q |
208 |
atgacttaacctgtatagcttattttctttgtcgtgcttgtttgtta |
254 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
34614641 |
atgacttaacctgtatagcttattttctttgtcgtgcatgtttgtta |
34614595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 8 - 106
Target Start/End: Complemental strand, 34757387 - 34757289
Alignment:
| Q |
8 |
ggaagggagctcattgtgagggacaacaagagattccatcatttcaaagatggaaaatgctcttgtggagattattggtagtgttggtaaaaatgtaga |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34757387 |
ggaagggagctcattgtgagggacaacaagagattccatcatttcaaagatggaaaatgctcttgtggagattattggtagtgttggtaaaaatgtaga |
34757289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 110 - 216
Target Start/End: Complemental strand, 34742077 - 34741971
Alignment:
| Q |
110 |
tctgatgatatattgctagattgtattttgtttgctgccaaaaatctgtaaggttcaaatccatgtttggaaagatgaaagaaatttttattccatctat |
209 |
Q |
| |
|
||||||||||||||| || ||||| |||||||||||||||||||| |||||||||||| ||||||||||| ||||| |||||||||||| |||||||||| |
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| T |
34742077 |
tctgatgatatattgttaaattgttttttgtttgctgccaaaaatgtgtaaggttcaactccatgtttgggaagatcaaagaaatttttgttccatctat |
34741978 |
T |
|
| Q |
210 |
gacttaa |
216 |
Q |
| |
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|| |||| |
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| T |
34741977 |
gaattaa |
34741971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 34742271 - 34742222
Alignment:
| Q |
17 |
ctcattgtgagggacaacaagagattccatcatttcaaagatggaaaatg |
66 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
34742271 |
ctcattgtgagggacaacaagagatttcatcatttcaaagatggaaaatg |
34742222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 98 - 131
Target Start/End: Complemental strand, 34757287 - 34757254
Alignment:
| Q |
98 |
aaatgtagatactctgatgatatattgctagatt |
131 |
Q |
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|
|||||||||||||||||||||||||||||||||| |
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| T |
34757287 |
aaatgtagatactctgatgatatattgctagatt |
34757254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 219
Target Start/End: Complemental strand, 11541565 - 11541461
Alignment:
| Q |
112 |
tgatgatatattgctagattgtattttgtttgctgccaaaaatctgtaaggttcaaatccatgtttggaaagatgaaagaaatttttattccatctatga |
211 |
Q |
| |
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||||||||||||||||||| | ||||||||||| || ||||| ||||||||| |||||| |||||| ||||| || ||| |||| || ||| ||||| |
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| T |
11541565 |
tgatgatatattgctagatcg--ttttgtttgcttcc-aaaatgtgtaaggttgaaatcctagtttgggaagatcaagcaaagttttgtttcatgtatga |
11541469 |
T |
|
| Q |
212 |
cttaacct |
219 |
Q |
| |
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||||||| |
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| T |
11541468 |
attaacct |
11541461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 241
Target Start/End: Complemental strand, 34740983 - 34740855
Alignment:
| Q |
110 |
tctgatgatatattgctagattgtattttgtttgctgccaaaaatctgtaaggttcaaatccatgtttggaaagatgaaagaaatttttattccatctat |
209 |
Q |
| |
|
|||| |||||||| |||||||||| |||||||||| |||||| | ||||||| |||||||||||||| ||||| ||| | | |||| || || | || |
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| T |
34740983 |
tctggtgatatatcgctagattgt--tttgtttgctaccaaaatgca-taaggttgaaatccatgtttgggaagatcaaacagagttttctttcagcaat |
34740887 |
T |
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| Q |
210 |
gacttaacctgtatagcttattttctttgtcg |
241 |
Q |
| |
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| ||||||| ||||| |||||| |||||||| |
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| T |
34740886 |
caattaacctatatagtttatttcctttgtcg |
34740855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 86
Target Start/End: Complemental strand, 33779070 - 33778995
Alignment:
| Q |
11 |
agggagctcattgtgagggacaacaagagattccatcatttcaaagatggaaaatgctcttgtggagattattggt |
86 |
Q |
| |
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||||| || ||||| || || ||||| || || ||||||||||| |||||||||||||||||||| ||||| |||| |
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| T |
33779070 |
agggaactgattgttagagataacaaaaggtttcatcatttcaaggatggaaaatgctcttgtggggattactggt |
33778995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 89
Target Start/End: Original strand, 17992990 - 17993032
Alignment:
| Q |
47 |
catttcaaagatggaaaatgctcttgtggagattattggtagt |
89 |
Q |
| |
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|||||||||||||| |||||||||||||| ||||| ||||||| |
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| T |
17992990 |
catttcaaagatgggaaatgctcttgtggtgattactggtagt |
17993032 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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