View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5236_high_1 (Length: 228)
Name: NF5236_high_1
Description: NF5236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5236_high_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 18 - 211
Target Start/End: Original strand, 42313923 - 42314116
Alignment:
| Q |
18 |
cttagctggttttgaagctgccataagtgacggtgttgatgtgctctcagtttctcttggtatgaagactcataacctttttacagattcaatatctaca |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
42313923 |
cttagctggttttgaagctgccataagtgacggtgttgatgtgctctcagtttctcttggtatgaagactcataacctttttacagattcaatatctata |
42314022 |
T |
|
| Q |
118 |
ggttcctttcatgcagtagcaaatggtatagtagtagttgcttctgctggaaattctggtccttattttggaactgtttcgaacgtggcacctt |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42314023 |
ggttcctttcatgcagtagcaaatggtatagtagtagttgcttctgctggaaattctggtccttattttggaactgtttcgaacgtggcacctt |
42314116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 68
Target Start/End: Original strand, 23040708 - 23040754
Alignment:
| Q |
22 |
gctggttttgaagctgccataagtgacggtgttgatgtgctctcagt |
68 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||||||| || ||||| |
|
|
| T |
23040708 |
gctggttttgaagctgcaataagtgatggtgttgatgtactttcagt |
23040754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 22 - 68
Target Start/End: Original strand, 42734744 - 42734790
Alignment:
| Q |
22 |
gctggttttgaagctgccataagtgacggtgttgatgtgctctcagt |
68 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
42734744 |
gctggttttgaagctgccataagtgatggtgttgatgtgctttcagt |
42734790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 62
Target Start/End: Complemental strand, 42762750 - 42762710
Alignment:
| Q |
22 |
gctggttttgaagctgccataagtgacggtgttgatgtgct |
62 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
42762750 |
gctggttttgaagctgccataagtgatggtgttgatgtgct |
42762710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 68
Target Start/End: Complemental strand, 42717141 - 42717095
Alignment:
| Q |
22 |
gctggttttgaagctgccataagtgacggtgttgatgtgctctcagt |
68 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| || ||||| ||||| |
|
|
| T |
42717141 |
gctggttttgaagctgccataagtgatggtgtcgacgtgctttcagt |
42717095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University