View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5236_high_12 (Length: 304)
Name: NF5236_high_12
Description: NF5236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5236_high_12 |
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| [»] scaffold0039 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 254; Significance: 1e-141; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 19417382 - 19417675
Alignment:
| Q |
1 |
aactctgaaattgaaaattcccaactaacacccactgtgtcatcaccagctgacaaattaatcatcttgaatgctggttcccaactctccataaaacttg |
100 |
Q |
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|||||| ||||||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
19417382 |
aactctaaaattgaaaattcccaactgacacccactgtgtcatcaccagttgacaaattattcatcttgaatgctggttcccaactctccataaaacttg |
19417481 |
T |
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| Q |
101 |
atggagacaattatcctgcttggagaattcagttcatggctctcttaacaggctatgatcttatgtgctatgtcgatgggaccaaactgtgtccttcaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |||||||||||| |
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| T |
19417482 |
atggagacaattatcctgcttggagaattcagttcatggctctcttaacaggctataatcttatgagctatgtcgatgggaccaaaccgtgtccttcaaa |
19417581 |
T |
|
| Q |
201 |
gattttggcggccaattctgcagctgtcaatccagcctttactcattgggttcgacaagatcaactcattctgcatggtatcgtctcatctgtg |
294 |
Q |
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| T |
19417582 |
gattttggaggccaattctgcagctgtcaatccagcctttactcattgggttagacaagatcaactcattctgcatggtatcatctcatctgtg |
19417675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 12 - 294
Target Start/End: Complemental strand, 24498062 - 24497780
Alignment:
| Q |
12 |
tgaaaattcccaactaacacccactgtgtcatcaccagctgacaaattaatcatcttgaatgctggttcccaactctccataaaacttgatggagacaat |
111 |
Q |
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||||| ||||||| | |||||||||||||||||| || ||| ||||| || | | ||||| ||||| ||||||| ||| || || ||||| || || |
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| T |
24498062 |
tgaaacttcccaaatgacacccactgtgtcatcatcaattgataaattgattgtgctaaatgcaggttctcaactctgcatcaagctcgatggtgaaaac |
24497963 |
T |
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| Q |
112 |
tatcctgcttggagaattcagttcatggctctcttaacaggctatgatcttatgtgctatgtcgatgggaccaaactgtgtccttcaaagattttggcgg |
211 |
Q |
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| T |
24497962 |
tatcctgcttggagaatccaattcatggctttgttaacaggctatgatcttatgggatacgttgatggtaccaaagaatgtccatcaaaaaatttggaga |
24497863 |
T |
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| Q |
212 |
ccaattctgcagctgtcaatccagcctttactcattgggttcgacaagatcaactcattctgcatggtatcgtctcatctgtg |
294 |
Q |
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| T |
24497862 |
acaattccacggctgttaatccagccttcactcattgggttagacaagatcaactcattttgcatgggattgtctcatctgtg |
24497780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 12 - 294
Target Start/End: Complemental strand, 24489728 - 24489446
Alignment:
| Q |
12 |
tgaaaattcccaactaacacccactgtgtcatcaccagctgacaaattaatcatcttgaatgctggttcccaactctccataaaacttgatggagacaat |
111 |
Q |
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||||| ||||||| | |||||||||||||||||| || ||| ||||| || | | ||||| ||||| ||||||| ||| || || ||||| || || |
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| T |
24489728 |
tgaaacttcccaaatgacacccactgtgtcatcatcaattgataaattgattgtgctaaatgcaggttctcaactctgcatcaagctcgatggtgaaaac |
24489629 |
T |
|
| Q |
112 |
tatcctgcttggagaattcagttcatggctctcttaacaggctatgatcttatgtgctatgtcgatgggaccaaactgtgtccttcaaagattttggcgg |
211 |
Q |
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||||||||||||||||| || ||||||||| | ||||||||||||||||||||| | || || ||||| |||||| ||||| ||||| ||||| | |
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| T |
24489628 |
tatcctgcttggagaatccaattcatggctttgttaacaggctatgatcttatgggatacgttgatggtaccaaagaatgtccatcaaaatatttggaga |
24489529 |
T |
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| Q |
212 |
ccaattctgcagctgtcaatccagcctttactcattgggttcgacaagatcaactcattctgcatggtatcgtctcatctgtg |
294 |
Q |
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| T |
24489528 |
acaattccacggctgttaatccagccttcactcattgggttagacaagatcaactcattttgcatgggattgtctcatctgtg |
24489446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 62110 - 61817
Alignment:
| Q |
1 |
aactctgaaattgaaaattcccaactaacacccactgtgtcatcaccagctgacaaattaatcatcttgaatgctggttcccaactctccataaaacttg |
100 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
62110 |
aactctgaaattgaaaattcccaactgacacccactgtgtcatcaccagttgacaaattaatcatcttgaatgctggttcccaactctccataaaacttg |
62011 |
T |
|
| Q |
101 |
atggagacaattatcctgcttggagaattcagttcatggctctcttaacaggctatgatcttatgtgctatgtcgatgggaccaaactgtgtccttcaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| || |
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| T |
62010 |
atggagacaattatcctgcttggagaattcagttcatggctctcttaataggctatgatcttatgagctatgtcgatgggaccaaactgtgtccttcgaa |
61911 |
T |
|
| Q |
201 |
gattttggcggccaattctgcagctgtcaatccagcctttactcattgggttcgacaagatcaactcattctgcatggtatcgtctcatctgtg |
294 |
Q |
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|||||||| ||||||||||| ||||||||||||||||||||||||||||||| | |||||||||||||||||| |||||||| ||||||||||| |
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| T |
61910 |
gattttggaggccaattctgtagctgtcaatccagcctttactcattgggttaggcaagatcaactcattctgtatggtatcatctcatctgtg |
61817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 83; Significance: 2e-39; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 12 - 294
Target Start/End: Original strand, 34290156 - 34290438
Alignment:
| Q |
12 |
tgaaaattcccaactaacacccactgtgtcatcaccagctgacaaattaatcatcttgaatgctggttcccaactctccataaaacttgatggagacaat |
111 |
Q |
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||||| ||||||| | |||||||||||||||||| || ||| ||||| || | | ||||| ||||| ||||||| ||| || || ||||| || || |
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| T |
34290156 |
tgaaacttcccaaatgacacccactgtgtcatcatcaattgataaattgattgtgctaaatgcaggttctcaactctgcatcaagctcgatggtgaaaac |
34290255 |
T |
|
| Q |
112 |
tatcctgcttggagaattcagttcatggctctcttaacaggctatgatcttatgtgctatgtcgatgggaccaaactgtgtccttcaaagattttggcgg |
211 |
Q |
| |
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||||||||||||||||| || ||||||||| | ||||||||||||||||||||| | || || ||||| |||||| ||||| ||||| ||||| | |
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| T |
34290256 |
tatcctgcttggagaatccaattcatggctttgttaacaggctatgatcttatgggatacgttgatggtaccaaagaatgtccatcaaaatatttggaga |
34290355 |
T |
|
| Q |
212 |
ccaattctgcagctgtcaatccagcctttactcattgggttcgacaagatcaactcattctgcatggtatcgtctcatctgtg |
294 |
Q |
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|||||| | ||||| ||||||||||| |||||||||||| ||||||||||||||||| ||||||| || |||||||||||| |
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| T |
34290356 |
acaattccacggctgttaatccagccttcactcattgggttagacaagatcaactcattttgcatgggattgtctcatctgtg |
34290438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 223 - 284
Target Start/End: Original strand, 31343985 - 31344046
Alignment:
| Q |
223 |
gctgtcaatccagcctttactcattgggttcgacaagatcaactcattctgcatggtatcgt |
284 |
Q |
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| T |
31343985 |
gctgtcaatcctgcctttacccattgggttcgacaggatcaactcatccttcatggcatcgt |
31344046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 52 - 131
Target Start/End: Complemental strand, 23974014 - 23973935
Alignment:
| Q |
52 |
gacaaattaatcatcttgaatgctggttcccaactctccataaaacttgatggagacaattatcctgcttggagaattca |
131 |
Q |
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||||||||||| || | ||||| || || ||| | ||||| ||||||||||||||||||||||| |||||||||||||| |
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| T |
23974014 |
gacaaattaattgtccttaatgcaggatctcaattatccatcaaacttgatggagacaattatccagcttggagaattca |
23973935 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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