View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5236_high_14 (Length: 302)

Name: NF5236_high_14
Description: NF5236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5236_high_14
NF5236_high_14
[»] chr4 (13 HSPs)
chr4 (19-302)||(34662010-34662293)
chr4 (53-302)||(24307249-24307498)
chr4 (53-302)||(26832761-26833010)
chr4 (53-300)||(23885855-23886102)
chr4 (53-302)||(26434050-26434299)
chr4 (53-302)||(26435830-26436079)
chr4 (53-300)||(23402102-23402349)
chr4 (54-300)||(23408544-23408790)
chr4 (54-300)||(23415713-23415959)
chr4 (53-300)||(23453375-23453622)
chr4 (53-300)||(23868760-23869007)
chr4 (110-238)||(23451792-23451920)
chr4 (53-117)||(31632862-31632926)
[»] chr1 (5 HSPs)
chr1 (77-302)||(41670426-41670651)
chr1 (57-302)||(40795795-40796040)
chr1 (57-302)||(29391492-29391737)
chr1 (56-179)||(33216594-33216717)
chr1 (53-134)||(45576397-45576478)
[»] chr7 (2 HSPs)
chr7 (92-302)||(40180312-40180522)
chr7 (56-179)||(47317431-47317554)
[»] chr2 (1 HSPs)
chr2 (86-132)||(14715445-14715491)
[»] chr8 (1 HSPs)
chr8 (202-302)||(29684726-29684826)


Alignment Details
Target: chr4 (Bit Score: 276; Significance: 1e-154; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 19 - 302
Target Start/End: Original strand, 34662010 - 34662293
Alignment:
Q  19 agaaaagatcacactaatcaataataattaaaacatctaagaacttgtaaacttcgttacagctttggtaccctcagacacagcatgcttagccaattct 118  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34662010 agaaaagatcacactaatcattaataattaaaacatctaagaacttgtaaacttcgttacagctttggtaccctcagacacagcatgcttagccaattct 34662109  T
Q  119 ccaggaagaacaagcctaacagcagtctgaatttccctcgaagttatcgtcggcttcttgttataccttgcaggtctggaagattcttgagcgagcttct 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  34662110 ccaggaagaacaagcctaacagcagtctgaatttccctcgaagttatcgtcggcttcttgttataccttgcaagtctggaagattcttgagcgagcttct 34662209  T
Q  219 cgaagatatcattgatgaaactgttcataatacccatggctttgcttgagataccaatgtcagggtgaacttgtttcagaacct 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34662210 cgaagatatcattgatgaaactgttcataatacccatggctttgcttgagataccaatgtcagggtgaacttgtttcagaacct 34662293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 53 - 302
Target Start/End: Complemental strand, 24307498 - 24307249
Alignment:
Q  53 atctaagaacttgtaaacttcgttacagctttggtaccctcagacacagcatgcttagccaattctccaggaagaacaagcctaacagcagtctgaattt 152  Q
    ||||||||||| || ||||| || |||||||||||||||||||| ||||||||||| |||||||| |||||||||||||| || ||||||||||||||||    
T  24307498 atctaagaactagtgaacttggtcacagctttggtaccctcagaaacagcatgcttggccaattcaccaggaagaacaagtctgacagcagtctgaattt 24307399  T
Q  153 ccctcgaagttatcgtcggcttcttgttataccttgcaggtctggaagattcttgagcgagcttctcgaagatatcattgatgaaactgttcataatacc 252  Q
    |||| ||||| || || ||||||||||| || |  ||| ||||||| ||||||||||| || |||||||||||||||||||||||||||||||| || ||    
T  24307398 cccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagctagtttctcgaagatatcattgatgaaactgttcattattcc 24307299  T
Q  253 catggctttgcttgagataccaatgtcagggtgaacttgtttcagaacct 302  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  24307298 catggctttgcttgagataccaatgtctgggtgaacttgtttcagaacct 24307249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 53 - 302
Target Start/End: Complemental strand, 26833010 - 26832761
Alignment:
Q  53 atctaagaacttgtaaacttcgttacagctttggtaccctcagacacagcatgcttagccaattctccaggaagaacaagcctaacagcagtctgaattt 152  Q
    ||||||||||| |||||||| || ||||| |||||||||||||| ||||||||||| |||||||| || || ||||||||||| || || ||||||||||    
T  26833010 atctaagaactagtaaacttagtgacagccttggtaccctcagaaacagcatgcttggccaattcaccgggcagaacaagcctgaccgcggtctgaattt 26832911  T
Q  153 ccctcgaagttatcgtcggcttcttgttataccttgcaggtctggaagattcttgagcgagcttctcgaagatatcattgatgaaactgttcataatacc 252  Q
    |||| ||||| || || ||||||||||| || |  ||| ||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  26832910 cccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcgagtttctcgaagatatcattgatgaaactgttcatgatacc 26832811  T
Q  253 catggctttgcttgagataccaatgtcagggtgaacttgtttcagaacct 302  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  26832810 catggctttgcttgagataccaatgtctgggtgaacttgtttcagaacct 26832761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 53 - 300
Target Start/End: Complemental strand, 23886102 - 23885855
Alignment:
Q  53 atctaagaacttgtaaacttcgttacagctttggtaccctcagacacagcatgcttagccaattctccaggaagaacaagcctaacagcagtctgaattt 152  Q
    ||||||||||| |||||||| || ||||||||||| |||||||| ||||||||||| |||||||| ||||||||||||||||| || |||||||||||||    
T  23886102 atctaagaactagtaaacttggtcacagctttggttccctcagagacagcatgcttggccaattcaccaggaagaacaagcctgactgcagtctgaattt 23886003  T
Q  153 ccctcgaagttatcgtcggcttcttgttataccttgcaggtctggaagattcttgagcgagcttctcgaagatatcattgatgaaactgttcataatacc 252  Q
    |||| ||||| || || ||||||||||| || |  ||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||    
T  23886002 cccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcatgatacc 23885903  T
Q  253 catggctttgcttgagataccaatgtcagggtgaacttgtttcagaac 300  Q
    |||||| |||||||||||||||||||| |||||||| || ||||||||    
T  23885902 catggccttgcttgagataccaatgtctgggtgaacctgcttcagaac 23885855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 53 - 302
Target Start/End: Complemental strand, 26434299 - 26434050
Alignment:
Q  53 atctaagaacttgtaaacttcgttacagctttggtaccctcagacacagcatgcttagccaattctccaggaagaacaagcctaacagcagtctgaattt 152  Q
    ||||||||||| |||||||| || ||||| |||||||||||||| ||||||||||| |||||||| || || ||||||||||| || || ||||||||||    
T  26434299 atctaagaactagtaaacttagtgacagccttggtaccctcagaaacagcatgcttggccaattcaccgggcagaacaagcctgaccgcggtctgaattt 26434200  T
Q  153 ccctcgaagttatcgtcggcttcttgttataccttgcaggtctggaagattcttgagcgagcttctcgaagatatcattgatgaaactgttcataatacc 252  Q
    |||| ||||| || || ||||||||||| || |  ||| ||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  26434199 cccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcgagtttctcgaagatatcattgatgaaactgttcatgatacc 26434100  T
Q  253 catggctttgcttgagataccaatgtcagggtgaacttgtttcagaacct 302  Q
    ||||||||||||||||||||||||||| || |||||||||||||||||||    
T  26434099 catggctttgcttgagataccaatgtctggatgaacttgtttcagaacct 26434050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 53 - 302
Target Start/End: Complemental strand, 26436079 - 26435830
Alignment:
Q  53 atctaagaacttgtaaacttcgttacagctttggtaccctcagacacagcatgcttagccaattctccaggaagaacaagcctaacagcagtctgaattt 152  Q
    ||||||||||| |||||||| || ||||| |||||||||||||| ||| ||||||| |||||||| || || ||||||||||| || || ||||||||||    
T  26436079 atctaagaactggtaaacttagtgacagccttggtaccctcagaaacatcatgcttggccaattcaccgggcagaacaagcctgaccgcggtctgaattt 26435980  T
Q  153 ccctcgaagttatcgtcggcttcttgttataccttgcaggtctggaagattcttgagcgagcttctcgaagatatcattgatgaaactgttcataatacc 252  Q
    |||| ||||| || || ||||||||||| || |  ||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||    
T  26435979 cccttgaagtgattgttggcttcttgttgtaacgagcaagtctggaagattcttgagtgagtttctcgaagatatcattgatgaaactgttcatgatacc 26435880  T
Q  253 catggctttgcttgagataccaatgtcagggtgaacttgtttcagaacct 302  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  26435879 catggctttgcttgagataccaatgtctgggtgaacttgtttcagaacct 26435830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 53 - 300
Target Start/End: Complemental strand, 23402349 - 23402102
Alignment:
Q  53 atctaagaacttgtaaacttcgttacagctttggtaccctcagacacagcatgcttagccaattctccaggaagaacaagcctaacagcagtctgaattt 152  Q
    ||||||||||| |||||||| || ||||||||||| ||||| || ||||||||||| |||||||| ||||||||||||||||| || |||||||||||||    
T  23402349 atctaagaactagtaaacttggtcacagctttggttccctctgagacagcatgcttggccaattcaccaggaagaacaagcctgactgcagtctgaattt 23402250  T
Q  153 ccctcgaagttatcgtcggcttcttgttataccttgcaggtctggaagattcttgagcgagcttctcgaagatatcattgatgaaactgttcataatacc 252  Q
    |||| ||||| || || ||||||||||| || |  ||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||    
T  23402249 cccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcatgatacc 23402150  T
Q  253 catggctttgcttgagataccaatgtcagggtgaacttgtttcagaac 300  Q
    |||||| |||||||||||||||||||| |||||||| || ||||||||    
T  23402149 catggccttgcttgagataccaatgtctgggtgaacctgcttcagaac 23402102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 54 - 300
Target Start/End: Original strand, 23408544 - 23408790
Alignment:
Q  54 tctaagaacttgtaaacttcgttacagctttggtaccctcagacacagcatgcttagccaattctccaggaagaacaagcctaacagcagtctgaatttc 153  Q
    ||||||| || |||||||| || ||||| ||||| || ||||| ||||||||||| ||||||||||||||||||||||| || || || |||||||||||    
T  23408544 tctaagagctagtaaacttagtcacagccttggtgccttcagaaacagcatgcttggccaattctccaggaagaacaagtctgaccgcggtctgaatttc 23408643  T
Q  154 cctcgaagttatcgtcggcttcttgttataccttgcaggtctggaagattcttgagcgagcttctcgaagatatcattgatgaaactgttcataataccc 253  Q
    ||| ||||| || || ||||||||||| || |  ||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||    
T  23408644 ccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcatgataccc 23408743  T
Q  254 atggctttgcttgagataccaatgtcagggtgaacttgtttcagaac 300  Q
    || ||||||||||||||||||||||| ||||||||||||||||||||    
T  23408744 atcgctttgcttgagataccaatgtctgggtgaacttgtttcagaac 23408790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 54 - 300
Target Start/End: Original strand, 23415713 - 23415959
Alignment:
Q  54 tctaagaacttgtaaacttcgttacagctttggtaccctcagacacagcatgcttagccaattctccaggaagaacaagcctaacagcagtctgaatttc 153  Q
    ||||||| || |||||||| || ||||| |||||||||||||| ||||||||||| |||||||| |||||||||||||| || || ||||||||||||||    
T  23415713 tctaagagctagtaaacttagtcacagccttggtaccctcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttc 23415812  T
Q  154 cctcgaagttatcgtcggcttcttgttataccttgcaggtctggaagattcttgagcgagcttctcgaagatatcattgatgaaactgttcataataccc 253  Q
    ||| ||||| || || ||||||||||| || |  ||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||    
T  23415813 ccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcatgataccc 23415912  T
Q  254 atggctttgcttgagataccaatgtcagggtgaacttgtttcagaac 300  Q
    ||||| |||||||||||||||||||| |||||||| || ||||||||    
T  23415913 atggccttgcttgagataccaatgtctgggtgaacctgcttcagaac 23415959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 53 - 300
Target Start/End: Original strand, 23453375 - 23453622
Alignment:
Q  53 atctaagaacttgtaaacttcgttacagctttggtaccctcagacacagcatgcttagccaattctccaggaagaacaagcctaacagcagtctgaattt 152  Q
    ||||||||||| |||||||| || ||||| ||||| || ||||| ||||||||||| |||||||| |||||||||||||| || || |||||||||||||    
T  23453375 atctaagaactagtaaacttggtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagactgactgcagtctgaattt 23453474  T
Q  153 ccctcgaagttatcgtcggcttcttgttataccttgcaggtctggaagattcttgagcgagcttctcgaagatatcattgatgaaactgttcataatacc 252  Q
    |||| ||||| || || ||||||||||| || |  ||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||    
T  23453475 cccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcatgatacc 23453574  T
Q  253 catggctttgcttgagataccaatgtcagggtgaacttgtttcagaac 300  Q
    |||||| |||||||||||||||||||| |||||||| || ||||||||    
T  23453575 catggccttgcttgagataccaatgtctgggtgaacatgattcagaac 23453622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 53 - 300
Target Start/End: Complemental strand, 23869007 - 23868760
Alignment:
Q  53 atctaagaacttgtaaacttcgttacagctttggtaccctcagacacagcatgcttagccaattctccaggaagaacaagcctaacagcagtctgaattt 152  Q
    ||||||||||| || ||||| || |||||||| || || ||||| |||||||| || |||||||| |||||||||||||| || ||||||||||||||||    
T  23869007 atctaagaactagtgaacttagtcacagcttttgttccttcagaaacagcatgtttggccaattcaccaggaagaacaagtctgacagcagtctgaattt 23868908  T
Q  153 ccctcgaagttatcgtcggcttcttgttataccttgcaggtctggaagattcttgagcgagcttctcgaagatatcattgatgaaactgttcataatacc 252  Q
    |||| ||||| || || ||||||||||| || |  ||| ||||||| ||||||||||| || |||||||||||||||||||||||||||||||| || ||    
T  23868907 cccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagtttctcgaagatatcattgatgaaactgttcattattcc 23868808  T
Q  253 catggctttgcttgagataccaatgtcagggtgaacttgtttcagaac 300  Q
    ||||||||||||||||||||||||||| |||||||| || ||||||||    
T  23868807 catggctttgcttgagataccaatgtctgggtgaacctgcttcagaac 23868760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 110 - 238
Target Start/End: Original strand, 23451792 - 23451920
Alignment:
Q  110 gccaattctccaggaagaacaagcctaacagcagtctgaatttccctcgaagttatcgtcggcttcttgttataccttgcaggtctggaagattcttgag 209  Q
    |||||||| || || ||||||||||| || || |||||||||||||| ||||| || || ||||||||||| || |  ||| |||||||  |||||||||    
T  23451792 gccaattcaccgggcagaacaagcctgactgcggtctgaatttcccttgaagtgattgttggcttcttgttgtagcgagcaagtctggagtattcttgag 23451891  T
Q  210 cgagcttctcgaagatatcattgatgaaa 238  Q
    |||||||||| |||||||| |||||||||    
T  23451892 cgagcttctcaaagatatcgttgatgaaa 23451920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 117
Target Start/End: Complemental strand, 31632926 - 31632862
Alignment:
Q  53 atctaagaacttgtaaacttcgttacagctttggtaccctcagacacagcatgcttagccaattc 117  Q
    |||||||| ||||| || || || ||| |||||||||||||| | ||| ||||||||||||||||    
T  31632926 atctaagagcttgtgaatttggtcacaactttggtaccctcacaaacaacatgcttagccaattc 31632862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 102; Significance: 1e-50; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 77 - 302
Target Start/End: Complemental strand, 41670651 - 41670426
Alignment:
Q  77 acagctttggtaccctcagacacagcatgcttagccaattctccaggaagaacaagcctaacagcagtctgaatttccctcgaagttatcgtcggcttct 176  Q
    ||||| ||||| |||||||| |||||||||||||| | ||| || || |||||||| | |||||||||||| || ||||  ||||| || || |||||||    
T  41670651 acagccttggttccctcagagacagcatgcttagcaagttcaccggggagaacaagacgaacagcagtctgtatctcccgagaagtgattgtaggcttct 41670552  T
Q  177 tgttataccttgcaggtctggaagattcttgagcgagcttctcgaagatatcattgatgaaactgttcataatacccatggctttgcttgagataccaat 276  Q
    |||| ||||| ||| ||||||||||||| |||||||||||||| ||||||||||||||||| |||||||| || ||||| || |||||||||||||||||    
T  41670551 tgttgtacctcgcaagtctggaagattcctgagcgagcttctcaaagatatcattgatgaagctgttcatgatccccatagccttgcttgagataccaat 41670452  T
Q  277 gtcagggtgaacttgtttcagaacct 302  Q
    |||||| ||||| || || |||||||    
T  41670451 gtcaggatgaacctgcttgagaacct 41670426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 57 - 302
Target Start/End: Complemental strand, 40796040 - 40795795
Alignment:
Q  57 aagaacttgtaaacttcgttacagctttggtaccctcagacacagcatgcttagccaattctccaggaagaacaagcctaacagcagtctgaatttccct 156  Q
    |||| |||||||| || || || |||||||| ||||| || ||||| ||||| || | ||| || |||||||| || | ||||||||||||||| || |     
T  40796040 aagagcttgtaaatttagtgactgctttggttccctcggagacagcgtgcttggcaagttcgccgggaagaacgagacgaacagcagtctgaatctcacg 40795941  T
Q  157 cgaagttatcgtcggcttcttgttataccttgcaggtctggaagattcttgagcgagcttctcgaagatatcattgatgaaactgttcataatacccatg 256  Q
     || || || || || |||||||| || |  ||  ||||||| ||||| |||||||||||||| ||||| |||||||||||||||||||| || |||||     
T  40795940 agaggtgatggtaggtttcttgttgtagcgagcgagtctggatgattcctgagcgagcttctcaaagatgtcattgatgaaactgttcatgatccccata 40795841  T
Q  257 gctttgcttgagataccaatgtcagggtgaacttgtttcagaacct 302  Q
    || ||||| ||||| ||||||||||| ||||| || || |||||||    
T  40795840 gccttgctggagattccaatgtcaggatgaacctgcttgagaacct 40795795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 57 - 302
Target Start/End: Complemental strand, 29391737 - 29391492
Alignment:
Q  57 aagaacttgtaaacttcgttacagctttggtaccctcagacacagcatgcttagccaattctccaggaagaacaagcctaacagcagtctgaatttccct 156  Q
    ||||||| ||||| || || ||||| ||||| || || || |||||||| || |||||||| || |||||||| |  |  ||||| || ||||| |||||    
T  29391737 aagaactcgtaaatttggtaacagccttggttccttcggaaacagcatgtttcgccaattcaccgggaagaaccaaacgcacagccgtttgaatctccct 29391638  T
Q  157 cgaagttatcgtcggcttcttgttataccttgcaggtctggaagattcttgagcgagcttctcgaagatatcattgatgaaactgttcataatacccatg 256  Q
    ||| || |||||||| |||||||| || |  ||   ||| |||| ||| |||||||| ||||| ||||||||||||||||||||||||||||| |||||     
T  29391637 cgacgtaatcgtcggtttcttgttgtaacgagccaatctagaagcttcctgagcgagtttctcaaagatatcattgatgaaactgttcataatccccata 29391538  T
Q  257 gctttgcttgagataccaatgtcagggtgaacttgtttcagaacct 302  Q
    ||||||   || ||||| || ||||| ||||| ||||| |||||||    
T  29391537 gctttggaagaaatacctatatcaggatgaacctgtttgagaacct 29391492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 56 - 179
Target Start/End: Complemental strand, 33216717 - 33216594
Alignment:
Q  56 taagaacttgtaaacttcgttacagctttggtaccctcagacacagcatgcttagccaattctccaggaagaacaagcctaacagcagtctgaatttccc 155  Q
    |||||||  |||||||| || ||||| |||||||||||||| |||||||| || |||||||| ||| |||||||||| || |||||||| ||||||| ||    
T  33216717 taagaaccagtaaacttggtcacagccttggtaccctcagaaacagcatgtttggccaattcaccaagaagaacaagtctgacagcagtttgaattttcc 33216618  T
Q  156 tcgaagttatcgtcggcttcttgt 179  Q
    | ||||| || || ||||||||||    
T  33216617 ttgaagtgattgttggcttcttgt 33216594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 53 - 134
Target Start/End: Complemental strand, 45576478 - 45576397
Alignment:
Q  53 atctaagaacttgtaaacttcgttacagctttggtaccctcagacacagcatgcttagccaattctccaggaagaacaagcc 134  Q
    |||||||| ||||| || || || |||||||||||||||||||| ||| ||||||||||||||||  | || ||||||||||    
T  45576478 atctaagagcttgtgaatttggtcacagctttggtaccctcagaaacaacatgcttagccaattcatcgggcagaacaagcc 45576397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 92 - 302
Target Start/End: Original strand, 40180312 - 40180522
Alignment:
Q  92 tcagacacagcatgcttagccaattctccaggaagaacaagcctaacagcagtctgaatttccctcgaagttatcgtcggcttcttgttataccttgcag 191  Q
    ||||| |||||||| ||||||||||||||||||||||| |  ||||||||||| ||||| ||||| ||||| ||||||||||||||||||||||| ||      
T  40180312 tcagaaacagcatgtttagccaattctccaggaagaaccaatctaacagcagtttgaatctccctagaagtaatcgtcggcttcttgttatacctagcca 40180411  T
Q  192 gtctggaagattcttgagcgagcttctcgaagatatcattgatgaaactgttcataatacccatggctttgcttgagataccaatgtcagggtgaacttg 291  Q
      |  || ||||| |||||||| ||||| |||||||| || |||||||||||||| || ||||| || |||||||| | ||| || ||||| ||||| ||    
T  40180412 aacgagacgattcctgagcgagtttctcaaagatatcgttaatgaaactgttcatgattcccatagccttgcttgaaacaccgatatcaggatgaacctg 40180511  T
Q  292 tttcagaacct 302  Q
    |||||||||||    
T  40180512 tttcagaacct 40180522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 56 - 179
Target Start/End: Complemental strand, 47317554 - 47317431
Alignment:
Q  56 taagaacttgtaaacttcgttacagctttggtaccctcagacacagcatgcttagccaattctccaggaagaacaagcctaacagcagtctgaatttccc 155  Q
    |||||||| |||||||| || |||||||||||||||||||| ||| |||| || |||||||| |||||||||| ||| || ||| |||| ||||||||||    
T  47317554 taagaactagtaaacttggtcacagctttggtaccctcagaaacaacatgtttggccaattcaccaggaagaataagtctgacaacagtttgaatttccc 47317455  T
Q  156 tcgaagttatcgtcggcttcttgt 179  Q
    | ||||| || || ||||||||||    
T  47317454 ttgaagtgattgttggcttcttgt 47317431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 86 - 132
Target Start/End: Complemental strand, 14715491 - 14715445
Alignment:
Q  86 gtaccctcagacacagcatgcttagccaattctccaggaagaacaag 132  Q
    ||||||||||||||| ||||||| |||||||||||||||||||||||    
T  14715491 gtaccctcagacacaacatgcttggccaattctccaggaagaacaag 14715445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 202 - 302
Target Start/End: Complemental strand, 29684826 - 29684726
Alignment:
Q  202 ttcttgagcgagcttctcgaagatatcattgatgaaactgttcataatacccatggctttgcttgagataccaatgtcagggtgaacttgtttcagaacc 301  Q
    |||||||||||| ||||  |||||||| || | ||||||||| ||||  ||||| ||||| ||||| | ||||||| |||| ||||||||||| ||||||    
T  29684826 ttcttgagcgagtttcttaaagatatcgttcacgaaactgttaataactcccatagctttacttgaaacaccaatggcaggatgaacttgtttgagaacc 29684727  T
Q  302 t 302  Q
    |    
T  29684726 t 29684726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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