View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5236_high_2 (Length: 352)
Name: NF5236_high_2
Description: NF5236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5236_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 248; Significance: 1e-137; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 34421796 - 34422047
Alignment:
| Q |
1 |
tatctatcatctgaaaccagatgaccttggaatttaattattttgttataggcttgattggtagactcactggaaaacaatcataaggtgtttttgtatt |
100 |
Q |
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| T |
34421796 |
tatctatcatctgaaaccagatgaccttggaatttaattattttgttataggcttgattggtagactcactggaaaacaatcataaggtgtttttgtatt |
34421895 |
T |
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| Q |
101 |
ttgtattgacttatttgtttcaaattattctcctattcattggcttcagccaacttcggataaaaacttttttctcatggatgtgtgtatttgtggggtt |
200 |
Q |
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| T |
34421896 |
ttgtattgacttatttgtttcaaattattctcctattcattggcttcagccaacttcggataaaaacttttttctcatggatgtgtgtatttgtggggtt |
34421995 |
T |
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| Q |
201 |
gattctctttttatttctttctgttaaaagctgtatttgttttggtataaat |
252 |
Q |
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| T |
34421996 |
gattctctttttctttctttctgttaaaagctgtatttgttttggtataaat |
34422047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 269 - 343
Target Start/End: Original strand, 34423298 - 34423372
Alignment:
| Q |
269 |
gattgaacaagtttttatttgaatagtaaaaaccagtttaatttgtgaagtgaaaaggatggtggtggtctgtgg |
343 |
Q |
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| T |
34423298 |
gattgaacaagtttttatttgaatagtaaaaaccagtttagtttgtgaagtgaaaaggacggtggtggtctgtgg |
34423372 |
T |
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