View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5236_high_5 (Length: 334)
Name: NF5236_high_5
Description: NF5236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5236_high_5 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 9 - 334
Target Start/End: Complemental strand, 36423005 - 36422680
Alignment:
| Q |
9 |
accacagaggctttcctaggaagtaatggttgaccatttttccatttgaggacaagttctttgtctggttcttctagaacaatggaattgagagtgtaac |
108 |
Q |
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| T |
36423005 |
accacagaggctttcctaggaagtaatggttgaccatttttccatttgaggacaagttctttgtctggttcttctagaacaatggaattgagagtgtaac |
36422906 |
T |
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| Q |
109 |
tgtttgaggacttaaaaagagggtgtgtcgagaggatcgcacgaactttgttgaattcttggatggttagagggtctaaagggtggcgaggttcatcgga |
208 |
Q |
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| T |
36422905 |
tgtttgaggacttaaaaagagggtgtgtcgagaggatcgcacgaactttgttgaattcttggatggttagagggtctaaagggtggcgaggttcatcgga |
36422806 |
T |
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| Q |
209 |
ttcatggtttggttgttgatggcgagtggagaaggatggtttgtggattggatttgaagattgaaaacggttctttgaggtgcaccatccagagaagatg |
308 |
Q |
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| T |
36422805 |
ttcatggtttggttgttgacggcgagtggagaaggatggtttgtggattggatttgaagattgaaaacggttctttgaggtgcaccatccagagaagatg |
36422706 |
T |
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| Q |
309 |
ttgcagtctagagcttctttgttgaa |
334 |
Q |
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| T |
36422705 |
ttgcagtctagagcttctttgttgaa |
36422680 |
T |
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