View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5236_high_6 (Length: 333)
Name: NF5236_high_6
Description: NF5236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5236_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 324
Target Start/End: Complemental strand, 48747555 - 48747233
Alignment:
| Q |
1 |
tggtaatgctgctagaaatctactgttatggttcctgactttctttgtttttatttgtcaatgtgcttgaaatgagcatgaaaggactttttatttgcaa |
100 |
Q |
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| T |
48747555 |
tggtaatgctgctagaaatctcctgttatggttcctgactttctttgtttttatttgtcaatgtgcttgaaatgagcatgaaaggactttttatttgcaa |
48747456 |
T |
|
| Q |
101 |
atatatttagattatgtctctcgtgtatataaatgcttgtacactcctcgttatttgagtgataaatatttagctcagatttatgttggtatctagagca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48747455 |
atatatttagattatgtctctcgtgtatataaatgcttgtacactc-tcgttatttgagtgataaatatttagctcagatttatgttggtatctagagca |
48747357 |
T |
|
| Q |
201 |
tggtttgaaaaacacagtcctgtgagcttagcgccgcccagtttcagttttggtttctgttgtcgaaggaggagccataatccaatcctcccttcattcc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48747356 |
tggtttgaaaaacacagtcctgtgagcttagcgccgcccagtttcagttttggtttctgttgtcgaaggaggagccataatccaatcctcccttcattcc |
48747257 |
T |
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| Q |
301 |
caaagcagtttatttgctctgtgg |
324 |
Q |
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||||||||||||||||||||||| |
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| T |
48747256 |
taaagcagtttatttgctctgtgg |
48747233 |
T |
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