View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5237-Insertion-1 (Length: 1140)

Name: NF5237-Insertion-1
Description: NF5237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5237-Insertion-1
NF5237-Insertion-1
[»] chr2 (27 HSPs)
chr2 (8-703)||(14920739-14921432)
chr2 (767-957)||(14921496-14921692)
chr2 (562-703)||(25460692-25460837)
chr2 (503-646)||(20518423-20518569)
chr2 (587-698)||(24188784-24188897)
chr2 (767-863)||(21842602-21842700)
chr2 (767-883)||(21844231-21844349)
chr2 (781-878)||(18819272-18819371)
chr2 (767-868)||(25474609-25474711)
chr2 (770-883)||(24188596-24188713)
chr2 (605-701)||(22511628-22511727)
chr2 (769-868)||(27917452-27917553)
chr2 (768-863)||(35708375-35708471)
chr2 (767-868)||(20518667-20518769)
chr2 (595-701)||(27917276-27917385)
chr2 (767-837)||(41256778-41256848)
chr2 (783-840)||(19948942-19948999)
chr2 (767-840)||(23909068-23909141)
chr2 (408-474)||(27916886-27916952)
chr2 (408-496)||(22511958-22512046)
chr2 (767-883)||(9504501-9504622)
chr2 (767-883)||(9515867-9515988)
chr2 (767-879)||(17883970-17884087)
chr2 (767-862)||(18532946-18533042)
chr2 (447-496)||(21503417-21503466)
chr2 (767-883)||(25460508-25460628)
chr2 (916-957)||(27917587-27917628)
[»] chr4 (24 HSPs)
chr4 (768-881)||(29438012-29438129)
chr4 (504-646)||(29438252-29438399)
chr4 (768-957)||(19602285-19602483)
chr4 (768-862)||(18444816-18444910)
chr4 (768-842)||(27303355-27303428)
chr4 (530-646)||(19899921-19900041)
chr4 (590-701)||(19602546-19602660)
chr4 (595-701)||(1002003-1002112)
chr4 (585-667)||(20984837-20984922)
chr4 (767-862)||(7023633-7023731)
chr4 (767-863)||(9782507-9782604)
chr4 (428-497)||(13066837-13066906)
chr4 (503-636)||(17183764-17183900)
chr4 (428-498)||(19602950-19603020)
chr4 (603-652)||(1002175-1002224)
chr4 (771-883)||(24576924-24577037)
chr4 (809-863)||(21047797-21047852)
chr4 (767-818)||(22219353-22219404)
chr4 (422-476)||(7023034-7023088)
chr4 (420-466)||(10450307-10450353)
chr4 (778-882)||(10577047-10577156)
chr4 (767-863)||(20985020-20985118)
chr4 (503-545)||(22120609-22120651)
chr4 (420-496)||(51885861-51885938)
[»] chr3 (18 HSPs)
chr3 (767-883)||(14280696-14280816)
chr3 (523-702)||(4597881-4598064)
chr3 (767-883)||(22488276-22488395)
chr3 (767-868)||(5632021-5632124)
chr3 (767-881)||(8401811-8401929)
chr3 (579-691)||(8714182-8714297)
chr3 (579-691)||(9066069-9066184)
chr3 (577-642)||(26298564-26298629)
chr3 (603-701)||(22488118-22488219)
chr3 (550-646)||(28730811-28730908)
chr3 (767-868)||(26419354-26419458)
chr3 (769-868)||(18474808-18474910)
chr3 (421-476)||(19541924-19541979)
chr3 (774-863)||(26298388-26298478)
chr3 (434-476)||(13586026-13586068)
chr3 (769-826)||(19263295-19263353)
chr3 (767-870)||(23907695-23907801)
chr3 (767-836)||(33914010-33914078)
[»] scaffold0186 (2 HSPs)
scaffold0186 (555-703)||(32936-33087)
scaffold0186 (767-868)||(33151-33254)
[»] chr8 (19 HSPs)
chr8 (555-703)||(18771704-18771855)
chr8 (768-863)||(6887612-6887709)
chr8 (767-868)||(18771537-18771640)
chr8 (555-646)||(13582804-13582896)
chr8 (768-862)||(5154383-5154479)
chr8 (767-863)||(27084978-27085076)
chr8 (624-701)||(30544505-30544585)
chr8 (503-613)||(18789728-18789842)
chr8 (769-957)||(30850462-30850658)
chr8 (555-646)||(11438227-11438319)
chr8 (420-496)||(16048624-16048700)
chr8 (767-868)||(12774270-12774373)
chr8 (768-834)||(24120896-24120963)
chr8 (767-837)||(32239900-32239970)
chr8 (767-828)||(14184566-14184628)
chr8 (783-863)||(30544342-30544424)
chr8 (420-496)||(26853586-26853663)
chr8 (421-498)||(27117426-27117503)
chr8 (767-883)||(28900732-28900850)
[»] chr1 (23 HSPs)
chr1 (768-868)||(19257371-19257473)
chr1 (767-868)||(52270627-52270731)
chr1 (770-883)||(21549237-21549351)
chr1 (504-650)||(21549472-21549626)
chr1 (779-868)||(14744864-14744955)
chr1 (767-883)||(50047675-50047796)
chr1 (767-840)||(12810793-12810866)
chr1 (767-884)||(30676013-30676133)
chr1 (421-498)||(25664822-25664899)
chr1 (767-835)||(25665194-25665263)
chr1 (771-823)||(25374199-25374251)
chr1 (634-701)||(52270492-52270562)
chr1 (421-496)||(23420485-23420559)
chr1 (767-852)||(23521140-23521226)
chr1 (435-498)||(25132653-25132716)
chr1 (504-646)||(25778537-25778683)
chr1 (417-472)||(33083610-33083665)
chr1 (767-862)||(15416445-15416543)
chr1 (580-646)||(25731134-25731200)
chr1 (503-545)||(52269605-52269647)
chr1 (577-639)||(52269680-52269742)
chr1 (587-628)||(14580978-14581019)
chr1 (423-496)||(23506792-23506864)
[»] chr7 (22 HSPs)
chr7 (768-883)||(5312186-5312305)
chr7 (767-864)||(30406181-30406280)
chr7 (767-863)||(24596402-24596500)
chr7 (409-497)||(22271046-22271134)
chr7 (619-701)||(15758196-15758281)
chr7 (587-701)||(21544117-21544234)
chr7 (767-868)||(21544299-21544399)
chr7 (767-883)||(9760688-9760808)
chr7 (768-862)||(2629934-2630029)
chr7 (769-828)||(11082187-11082244)
chr7 (503-613)||(10924741-10924855)
chr7 (767-840)||(26839609-26839682)
chr7 (587-644)||(9760933-9760990)
chr7 (767-868)||(9405267-9405369)
chr7 (587-701)||(9801314-9801431)
chr7 (420-498)||(18494564-18494643)
chr7 (767-868)||(21536955-21537058)
chr7 (555-646)||(22334498-22334589)
chr7 (767-868)||(15758029-15758131)
chr7 (428-498)||(21536418-21536488)
chr7 (767-868)||(315730-315833)
chr7 (450-495)||(6272135-6272180)
[»] chr5 (15 HSPs)
chr5 (550-646)||(18281399-18281496)
chr5 (767-957)||(18281618-18281817)
chr5 (779-957)||(20695139-20695325)
chr5 (555-646)||(22643134-22643226)
chr5 (767-840)||(24268725-24268797)
chr5 (767-840)||(24345355-24345427)
chr5 (768-833)||(19763299-19763365)
chr5 (768-859)||(24131242-24131336)
chr5 (778-868)||(17028870-17028962)
chr5 (780-861)||(7742306-7742388)
chr5 (778-883)||(20084084-20084193)
chr5 (768-837)||(20715217-20715286)
chr5 (768-840)||(12339444-12339516)
chr5 (419-472)||(19571051-19571104)
chr5 (896-957)||(19763435-19763496)
[»] chr6 (14 HSPs)
chr6 (604-701)||(28178762-28178862)
chr6 (619-701)||(1558094-1558179)
chr6 (767-868)||(9396001-9396105)
chr6 (767-868)||(9725592-9725694)
chr6 (428-495)||(13803962-13804029)
chr6 (779-883)||(15369300-15369405)
chr6 (420-496)||(15576167-15576244)
chr6 (422-498)||(8037021-8037097)
chr6 (428-476)||(13782404-13782452)
chr6 (428-476)||(13789726-13789774)
chr6 (767-868)||(15319432-15319535)
chr6 (767-868)||(17859887-17859990)
chr6 (767-868)||(1558244-1558346)
chr6 (429-499)||(22263583-22263653)
[»] scaffold0337 (1 HSPs)
scaffold0337 (767-868)||(3751-3854)
[»] scaffold0107 (1 HSPs)
scaffold0107 (419-498)||(32834-32913)
[»] scaffold0855 (1 HSPs)
scaffold0855 (768-840)||(2430-2502)
[»] scaffold0847 (1 HSPs)
scaffold0847 (768-840)||(2595-2667)
[»] scaffold0065 (2 HSPs)
scaffold0065 (604-648)||(13119-13163)
scaffold0065 (767-868)||(12884-12987)
[»] scaffold0100 (1 HSPs)
scaffold0100 (797-883)||(37573-37662)
[»] scaffold0804 (1 HSPs)
scaffold0804 (587-628)||(695-736)


Alignment Details
Target: chr2 (Bit Score: 543; Significance: 0; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 543; E-Value: 0
Query Start/End: Original strand, 8 - 703
Target Start/End: Original strand, 14920739 - 14921432
Alignment:
Q  8 acctaggcatacctatattcagaggtaaacctaaggtcatttatatttaatcaattgcagataggataaagtgtaatttagttgcttggaaatcttctct 107  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14920739 acctaggcatacctatattcagaggtaaacctaaggtaatttatatttaatcaattgcagataggataaagtgtaatttagttgcttggaaatcttctct 14920838  T
Q  108 ccatacatggaataattcaatatgtcaagagtgtgatttatagtatgatggtgtgtttcctcnnnnnnnnnnnnnnnngtatgatggtgtgtagcattca 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                ||||||||||||||||||||||    
T  14920839 ccatacatggaataattcaatatgtcaagagtgtgatttatagtatgatggtgtgtttcctcaaaaaaaaaaaaa---gtatgatggtgtgtagcattca 14920935  T
Q  208 catatatgcctggcctctatccttaatcaaagaggtggataagtgcactagaaatttcatttggtcaatgtaatattcagaaaagaaagttggtaattgt 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  14920936 catatatgcctggcctctatccttaatcaaagaggtggataagtgcactagaaatttcatttggtcaatgtaatattgagaaaagaaagttggtaattgt 14921035  T
Q  308 tgcttgccataaggtttgtagtcctatcggagaaggcggtcttagtttaagatcaataagagacattaatgatgcggccaatctcaaggnnnnnnnnata 407  Q
    |||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||        |||    
T  14921036 tgcttgccataaagttagtagtcctatcggagaaggtggtcttagtttaagatcaataagagacattaatgatgcggccaatctcaaggtttttt--ata 14921133  T
Q  408 gtgattttaggtaaattggtaagtgcaccaaatcgtacaaaataataaagtagtgagttaatcgtctcctcagagattgtcgttcaactcgtgctgaaag 507  Q
    |||||||||| |||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||||||| ||||||    
T  14921134 gtgattttagataaattggtaagtgcatcaaatcgtacaaaataataaagtaatgagttaatcgtctcctcagggattgttgttcaactcgtgatgaaag 14921233  T
Q  508 tagaatataatcccgtgatgaatcagtggaagtttattaatcccccacaattaaaccatttacaattgtgggttccattaagatgaattatagccataaa 607  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||    
T  14921234 tagaacataatcccgtgatgaatcagtggaagtttattaatcccccacaattaaaccatttacaattgtgggttcctttaagatgagttatagccataaa 14921333  T
Q  608 ttcatagttaaattcaattatattagaaactaagcaatt---tactgccttgtttgaatggaagggagggttgtcaatcttaatattgctccatctaag 703  Q
    |||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  14921334 ttcatagttaaattcaattatattagaaactaagcaattcactactgccttgtttgaatggaagtgagggttgtcaatcttaatattgctccatctaag 14921432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 143; E-Value: 2e-74
Query Start/End: Original strand, 767 - 957
Target Start/End: Original strand, 14921496 - 14921692
Alignment:
Q  767 ctttattaatagaatccaacaaataagaaaggttcatcgaggaaccctaatcgaagaggttttgttgctcatgg-aaccgacatcattacaaaacaattg 865  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  14921496 ctttattaatagaatccaacaaataagaaaggttcatcgaggaaccctaatcgaagaggttttgttgctcatggcaaccgacatcattacaaaacaattg 14921595  T
Q  866 --aaacataccctagagaga--catagaaagatggatcctctgccttg-aacttgtgatgattgacctttgccttgtaccgctagccttctgaatga 957  Q
      ||||||||||||||||||   |||||| |||||||||||||||||| |||| ||||||||||||||||||||| |||||||||||||||||||||    
T  14921596 aaaaacataccctagagagaacaatagaaggatggatcctctgccttgaaactcgtgatgattgacctttgccttttaccgctagccttctgaatga 14921692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 562 - 703
Target Start/End: Complemental strand, 25460837 - 25460692
Alignment:
Q  562 accatttacaattgtg-ggttccattaagatgaattatagccataaattcatagttaaattcaattatattagaaactaagcaatt---tactgccttgt 657  Q
    ||||||||||||| || |||||| ||||| ||| |||||||| |||||||||| ||  ||||||||||||||||||||||||||||   |||||||||||    
T  25460837 accatttacaattatgaggttcccttaagttgagttatagccctaaattcatactttgattcaattatattagaaactaagcaattcactactgccttgt 25460738  T
Q  658 ttgaatggaagggagggttgtcaatcttaatattgctccatctaag 703  Q
    |||||| || | |||||||||||||||||||||||||| |||||||    
T  25460737 ttgaattgaggcgagggttgtcaatcttaatattgctctatctaag 25460692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 503 - 646
Target Start/End: Original strand, 20518423 - 20518569
Alignment:
Q  503 gaaagtagaatataatcccgtgatgaatcagtggaagtttatt---aatcccccacaattaaaccatttacaattgtgg-gttccattaagatgaattat 598  Q
    |||||||||| |||| |||||||||||||||||||||||||||   |   |||  ||||| ||||||||||||||| || ||||| |||||| || ||||    
T  20518423 gaaagtagaacataa-cccgtgatgaatcagtggaagtttattttaacatccctgcaattcaaccatttacaattgcggagttccgttaagacgagttat 20518521  T
Q  599 agccataaattcatagttaaattcaattatattagaaactaagcaatt 646  Q
    |||| |||||||||| ||| ||||||||||||||||||||||||||||    
T  20518522 agccctaaattcatacttagattcaattatattagaaactaagcaatt 20518569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 587 - 698
Target Start/End: Complemental strand, 24188897 - 24188784
Alignment:
Q  587 aagatgaattatagccataaattcatagttaaattcaattatattagaaactaagcaatt---tactgccttgtttgaatggaagggagggttgtcaatc 683  Q
    ||||||| || ||||| |||||||||| ||| ||||||||||||||||||||||||||||   || || ||||||  |||||| | ||||||||||||||    
T  24188897 aagatgagttgtagcc-taaattcatacttagattcaattatattagaaactaagcaattcactattgtcttgttcaaatggaggtgagggttgtcaatc 24188799  T
Q  684 ttaatattgctccat 698  Q
     | ||||||||||||    
T  24188798 cttatattgctccat 24188784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 767 - 863
Target Start/End: Original strand, 21842602 - 21842700
Alignment:
Q  767 ctttattaatagaatccaacaaataagaaag-gttcatcgaggaaccctaatcgaagaggttttgttgctcatgg-aaccgacatcattacaaaacaat 863  Q
    |||||||||| |||||||||||||||||| | |||||||  |||||||||||| ||||||||| ||||  ||||| |||  ||||||||||||||||||    
T  21842602 ctttattaattgaatccaacaaataagaatgagttcatcttggaaccctaatcaaagaggtttagttgtacatggcaacatacatcattacaaaacaat 21842700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 767 - 883
Target Start/End: Original strand, 21844231 - 21844349
Alignment:
Q  767 ctttattaatagaatccaacaaataagaaag-gttcatcgaggaaccctaatcgaagaggttttgttgctcatgg-aaccgacatcattacaaaacaatt 864  Q
    |||||||||| |||||||||||||||||| | |||||||  |||||||||||| ||||||||| ||||  ||||| |||  |||||||||||||||||      
T  21844231 ctttattaattgaatccaacaaataagaatgagttcatcttggaaccctaatcaaagaggtttagttgtacatggcaacatacatcattacaaaacaaga 21844330  T
Q  865 gaaacataccctagagaga 883  Q
     ||||| |||||| |||||    
T  21844331 aaaacaaaccctaaagaga 21844349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 781 - 878
Target Start/End: Complemental strand, 18819371 - 18819272
Alignment:
Q  781 tccaacaaataagaaaggttcatcgaggaaccctaatcgaagaggttttgttgctcatg-gaaccgacatcattacaaaacaattg--aaacatacccta 877  Q
    ||||||||||||||| ||| ||||| |||||||||||| ||||||| | ||||||||||  ||||| ||||||||||||||||| |  ||||||||||||    
T  18819371 tccaacaaataagaagggt-catcgtggaaccctaatcaaagaggtctagttgctcatgacaaccgtcatcattacaaaacaatagaaaaacatacccta 18819273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 767 - 868
Target Start/End: Complemental strand, 25474711 - 25474609
Alignment:
Q  767 ctttattaatagaatccaacaaataagaaagg-ttcatcgaggaaccctaatcgaagaggttttgttgctcatgg-aaccgacatcattacaaaacaatt 864  Q
    ||||||||||| | | ||||||||||||| || ||||||| |||||| ||||| ||||||||| ||||||||||| ||| |||||||| ||||||||||     
T  25474711 ctttattaataaatttcaacaaataagaaggggttcatcgtggaaccataatc-aagaggtttagttgctcatggcaacagacatcataacaaaacaata 25474613  T
Q  865 gaaa 868  Q
    ||||    
T  25474612 gaaa 25474609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 770 - 883
Target Start/End: Complemental strand, 24188713 - 24188596
Alignment:
Q  770 tattaatagaatccaacaaataagaaag-gttcatcgaggaaccctaatcgaagaggttttgttgctcatgg-aaccgacatcattacaaaacaattg-- 865  Q
    |||||||||||||||||||||||||| | |||||||  |||||| ||||| || |||||| ||||||||||| ||||||| ||||  ||||| ||| |      
T  24188713 tattaatagaatccaacaaataagaaggagttcatcatggaaccttaatcaaacaggtttagttgctcatggcaaccgacgtcatctcaaaataatagaa 24188614  T
Q  866 aaacataccctagagaga 883  Q
    ||||| ||||||||||||    
T  24188613 aaacacaccctagagaga 24188596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 605 - 701
Target Start/End: Complemental strand, 22511727 - 22511628
Alignment:
Q  605 aaattcatagttaaattcaattatattagaaactaagcaatttact---gccttgtttgaatggaagggagggttgtcaatcttaatattgctccatcta 701  Q
    ||||||||| | | ||||||||||||||||||||||| |||| |||   | ||| || ||||||| | |||||||||||||| |||||||||| ||||||    
T  22511727 aaattcatactcatattcaattatattagaaactaagtaattcactaatgtcttattcgaatggaggcgagggttgtcaatcctaatattgctgcatcta 22511628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 769 - 868
Target Start/End: Original strand, 27917452 - 27917553
Alignment:
Q  769 ttattaatagaatccaacaaataagaaag-gttcatcgaggaaccctaatcgaagaggttttgttgctcatgg-aaccgacatcattacaaaacaattga 866  Q
    |||||||| |||||||||||||| ||| | | ||| ||  ||| ||||||| |||| |||| ||||||||||| ||||||||||||||||||||||| ||    
T  27917452 ttattaatggaatccaacaaataggaaggtgatcaacgttgaaacctaatcaaagaagtttagttgctcatggcaaccgacatcattacaaaacaataga 27917551  T
Q  867 aa 868  Q
    ||    
T  27917552 aa 27917553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 768 - 863
Target Start/End: Complemental strand, 35708471 - 35708375
Alignment:
Q  768 tttattaatagaatccaacaaataagaaag-gttcatcgaggaaccctaatcgaagaggttttgttgctcatgg-aaccgacatcattacaaaacaat 863  Q
    |||||||||| | ||||||||||||||| | |||||||| |||||| ||||| ||||||||| ||||||||||| |||  ||||||| ||||||||||    
T  35708471 tttattaataaattccaacaaataagaatgagttcatcgtggaaccttaatc-aagaggtttagttgctcatggcaacatacatcataacaaaacaat 35708375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 767 - 868
Target Start/End: Original strand, 20518667 - 20518769
Alignment:
Q  767 ctttattaatagaatccaacaaataagaaagg-ttcatcgaggaaccctaatcgaagaggttttgttgctcatgga-accgacatcattacaaaacaatt 864  Q
    |||||||||| || ||||| ||||||||| || |||||||  ||||||||||| | ||||||| |||||||||||| ||| |||||||||||||| |||     
T  20518667 ctttattaattgattccaa-aaataagaaggggttcatcgtagaaccctaatcaaggaggtttagttgctcatggacaccaacatcattacaaaataata 20518765  T
Q  865 gaaa 868  Q
    ||||    
T  20518766 gaaa 20518769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 595 - 701
Target Start/End: Original strand, 27917276 - 27917385
Alignment:
Q  595 ttatagccataaattcatagttaaattcaattatattagaaactaagcaatt---tactgccttgtttgaatggaagggagggttgtcaatcttaatatt 691  Q
    |||||||| ||| |||||| | | ||| |||||||||||||||||||||| |   || || ||||||||| || | | ||||||| |||||| |||||||    
T  27917276 ttatagccctaagttcatactcagatttaattatattagaaactaagcaagtcaatattgtcttgtttgagtgaaggtgagggttttcaatcctaatatt 27917375  T
Q  692 gctccatcta 701  Q
    ||||||||||    
T  27917376 gctccatcta 27917385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 767 - 837
Target Start/End: Original strand, 41256778 - 41256848
Alignment:
Q  767 ctttattaatagaatccaacaaataagaaa-ggttcatcgaggaaccctaatcgaagaggttttgttgctca 837  Q
    ||||||||||| | |||||||||||||||| ||||||||| |||||||||||| |||||||||  |||||||    
T  41256778 ctttattaataaattccaacaaataagaaagggttcatcgtggaaccctaatc-aagaggtttaattgctca 41256848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 783 - 840
Target Start/End: Original strand, 19948942 - 19948999
Alignment:
Q  783 caacaaataagaaagg-ttcatcgaggaaccctaatcgaagaggttttgttgctcatgg 840  Q
    |||||||||||||||| ||||||| |||||||||||| ||||||||| |||||||||||    
T  19948942 caacaaataagaaaggattcatcgtggaaccctaatc-aagaggtttagttgctcatgg 19948999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 767 - 840
Target Start/End: Original strand, 23909068 - 23909141
Alignment:
Q  767 ctttattaatagaatccaacaaataagaaagg-ttcatcgaggaaccctaatcgaagaggttttgttgctcatgg 840  Q
    ||||||||||| | ||||||||||||||| || ||||||| |||||||| ||| ||||||||| |||||||||||    
T  23909068 ctttattaataaattccaacaaataagaagggattcatcgtggaaccctgatc-aagaggtttagttgctcatgg 23909141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 408 - 474
Target Start/End: Original strand, 27916886 - 27916952
Alignment:
Q  408 gtgattttaggtaaattggtaagtgcaccaaatcgtacaaaataataaagtagtgagttaatcgtct 474  Q
    ||||||||||  ||||||  ||||||| |||||  |||||||||||||| |||||||||||||||||    
T  27916886 gtgattttagtgaaattgacaagtgcatcaaattttacaaaataataaaatagtgagttaatcgtct 27916952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 408 - 496
Target Start/End: Complemental strand, 22512046 - 22511958
Alignment:
Q  408 gtgattttaggtaaattggtaagtgcaccaaatcgtacaaaataataaagtagtgagttaatcgtctcctcagagattgtcgttcaact 496  Q
    ||||||||||  ||||||| |||||||||||||||||  || |||| || |||  |||||||||||||| ||  |||||| ||||||||    
T  22512046 gtgattttagtgaaattggcaagtgcaccaaatcgtatcaagtaatcaattaggaagttaatcgtctccacaaggattgtagttcaact 22511958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 767 - 883
Target Start/End: Complemental strand, 9504622 - 9504501
Alignment:
Q  767 ctttattaatagaatccaacaaataagaaagg-ttcatcgaggaaccctaatcgaagaggttttgttgctcatgg-aaccgacatcattacaaaacaatt 864  Q
    |||| ||||| |||||||||||||||||| || ||||||   ||||| ||||| ||||||||| ||||  ||||| |||  ||||||| ||||||||||     
T  9504622 ctttgttaatggaatccaacaaataagaagggattcatcttagaaccataatcaaagaggtttagttgtacatggcaacaaacatcataacaaaacaatg 9504523  T
Q  865 g---aaacataccctagagaga 883  Q
    |   ||||||||||||||||||    
T  9504522 gaaaaaacataccctagagaga 9504501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 767 - 883
Target Start/End: Complemental strand, 9515988 - 9515867
Alignment:
Q  767 ctttattaatagaatccaacaaataagaaagg-ttcatcgaggaaccctaatcgaagaggttttgttgctcatgg-aaccgacatcattacaaaacaatt 864  Q
    |||| ||||| |||||||||||||||||| || ||||||   ||||| ||||| ||||||||| ||||  ||||| |||  ||||||| ||||||||||     
T  9515988 ctttgttaatggaatccaacaaataagaagggattcatcttagaaccataatcaaagaggtttagttgtacatggcaacaaacatcataacaaaacaatg 9515889  T
Q  865 g---aaacataccctagagaga 883  Q
    |   ||||||||||||||||||    
T  9515888 gaaaaaacataccctagagaga 9515867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 767 - 879
Target Start/End: Original strand, 17883970 - 17884087
Alignment:
Q  767 ctttattaatagaatccaacaaataagaa-aggttcatcgaggaaccctaatcga-agaggttttgttgctcatgg-aaccgacatcattacaaaacaat 863  Q
    |||||||| | |||||  |||||| |||| ||||||||   |||||||||||| | |||||||| ||||| ||||| |||| ||||||||||||||||||    
T  17883970 ctttattagttgaatctgacaaatgagaagaggttcatattggaaccctaatcaagagaggtttagttgcacatggcaaccaacatcattacaaaacaat 17884069  T
Q  864 tg--aaacataccctaga 879  Q
     |  ||||||||||||||    
T  17884070 agaaaaacataccctaga 17884087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 767 - 862
Target Start/End: Original strand, 18532946 - 18533042
Alignment:
Q  767 ctttattaatagaatccaacaaataagaa-aggttcatcgaggaaccctaatcgaagaggttttgttgctcatgg-aaccgacatcattacaaaacaa 862  Q
    ||||||||||| | | |||||||||||||  |||| |||| |||||||||||  ||||||||| ||||||||||| ||  |||||||| |||||||||    
T  18532946 ctttattaataaatttcaacaaataagaaggggtttatcgtggaaccctaat-aaagaggtttagttgctcatggcaatagacatcataacaaaacaa 18533042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 447 - 496
Target Start/End: Original strand, 21503417 - 21503466
Alignment:
Q  447 aaataataaagtagtgagttaatcgtctcctcagagattgtcgttcaact 496  Q
    ||||||||||||||| |||| ||||||||| ||  |||||||||||||||    
T  21503417 aaataataaagtagtaagtttatcgtctccacatggattgtcgttcaact 21503466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 767 - 883
Target Start/End: Complemental strand, 25460628 - 25460508
Alignment:
Q  767 ctttattaatagaatccaacaaataagaaag-gttcatcgaggaaccctaatcgaagaggttttgttgctcatg-gaaccgacatcattacaaaacaatt 864  Q
    |||||||||||||||| |||||||||||| |  ||||||| | ||| |||||| || |||||| ||||| ||||  || | | ||||||||||||||||     
T  25460628 ctttattaatagaatctaacaaataagaacgtattcatcgtgaaactctaatcaaataggtttagttgcgcatgaaaatcaaaatcattacaaaacaata 25460529  T
Q  865 g--aaacataccctagagaga 883  Q
    |  |||||||| |||||||||    
T  25460528 gaaaaacatacactagagaga 25460508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 916 - 957
Target Start/End: Original strand, 27917587 - 27917628
Alignment:
Q  916 tgatgattgacctttgccttgtaccgctagccttctgaatga 957  Q
    ||||| |||||| |||||||||||||||||| ||||||||||    
T  27917587 tgatgcttgacccttgccttgtaccgctagctttctgaatga 27917628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 3e-29; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 768 - 881
Target Start/End: Complemental strand, 29438129 - 29438012
Alignment:
Q  768 tttattaatagaatccaacaaataagaaagg-ttcatcgaggaaccctaatcgaagaggttttgttgctcatgg-aaccgacatcattacaaaacaattg 865  Q
    |||||||| |||||||||||||||||||||| ||||| | |||||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||| |    
T  29438129 tttattaaaagaatccaacaaataagaaagggttcattgtggaaccctaatcaaagaggtttagttgctcatggaaaccgacatcattacaaaacaatag 29438030  T
Q  866 --aaacataccctagaga 881  Q
      ||||||||||||||||    
T  29438029 aaaaacataccctagaga 29438012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 8e-24
Query Start/End: Original strand, 504 - 646
Target Start/End: Complemental strand, 29438399 - 29438252
Alignment:
Q  504 aaagtagaatataatcccgtgatgaatcagtggaagttta---ttaatc-ccccacaattaaaccatttacaattgtggg-ttccattaagatgaattat 598  Q
    ||||||||| ||||  |||||||||||||||||||||||    ||||   |||| ||||| ||||| ||||||||||||| |||| ||||||||| ||||    
T  29438399 aaagtagaacataactccgtgatgaatcagtggaagttttattttaacatcccctcaattcaaccacttacaattgtggggttcccttaagatgagttat 29438300  T
Q  599 agccataaattcatagttaaattcaattatattagaaactaagcaatt 646  Q
    | || |||||||||| |||||||| |||||||||||||||||||||||    
T  29438299 aaccctaaattcatatttaaattcgattatattagaaactaagcaatt 29438252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 768 - 957
Target Start/End: Complemental strand, 19602483 - 19602285
Alignment:
Q  768 tttattaatagaatccaacaaataagaaagg-ttcatcgaggaaccctaatcgaagaggttttgttgctcatgg-aaccgacatcattacaaaacaattg 865  Q
    ||||||||||| ||||||||||| |||| || ||||||  |||||||||||| |||| |||| ||||||||||| ||||||||||||||||||||||| |    
T  19602483 tttattaatagtatccaacaaatgagaaggggttcatcatggaaccctaatcaaagaagtttagttgctcatggcaaccgacatcattacaaaacaatag 19602384  T
Q  866 --aaacataccctagagaga--catagaaagatgg--atcctctgccttgaa-cttgtgatgattgacctttgccttgtaccgctagccttctgaatga 957  Q
      ||||||||||| |||| |   | || | ||| |  ||||||||||||||| ||  ||||| ||| || |||||||||||||||||| ||||||||||    
T  19602383 aaaaacataccctcgagataacaaaaggatgatagaaatcctctgccttgaagctcctgatgcttggcccttgccttgtaccgctagctttctgaatga 19602285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 768 - 862
Target Start/End: Complemental strand, 18444910 - 18444816
Alignment:
Q  768 tttattaatagaatccaacaaataagaaaggttcatcgaggaaccctaatcgaagaggttttgttgctcatggaaccgacatcattacaaaacaa 862  Q
    ||||||||| |||||||| ||||||||| | ||||||| |||||||||||| |||| ||||  |||||||||| ||| |||||||||||||||||    
T  18444910 tttattaattgaatccaaaaaataagaaggtttcatcgtggaaccctaatcaaagatgtttatttgctcatggcaccaacatcattacaaaacaa 18444816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 768 - 842
Target Start/End: Complemental strand, 27303428 - 27303355
Alignment:
Q  768 tttattaatagaatccaacaaataagaaaggttcatcgaggaaccctaatcgaagaggttttgttgctcatggaa 842  Q
    |||||||||| | ||||||||||||||| ||||||||| |||||||||||| ||||||||| |||||||||||||    
T  27303428 tttattaataaattccaacaaataagaagggttcatcgtggaaccctaatc-aagaggtttagttgctcatggaa 27303355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 530 - 646
Target Start/End: Complemental strand, 19900041 - 19899921
Alignment:
Q  530 tcagtggaagtttatt---aatcccccacaattaaaccatttacaattgtggg-ttccattaagatgaattatagccataaattcatagttaaattcaat 625  Q
    ||||||||||||||||   ||  |||| ||||| ||||||||||||||| ||| |||| || |||||| |||||||| ||||||| || ||| ||||||     
T  19900041 tcagtggaagtttattttaaaatccccgcaattcaaccatttacaattgcggggttccctttagatgagttatagccttaaattcgtatttatattcaaa 19899942  T
Q  626 tatattagaaactaagcaatt 646  Q
    ||| |||||||||||||||||    
T  19899941 tattttagaaactaagcaatt 19899921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 590 - 701
Target Start/End: Complemental strand, 19602660 - 19602546
Alignment:
Q  590 atgaattatagccataaattcatagttaaattcaattatattagaaactaagcaatt---tactgccttgtttgaatggaagggagggttgtcaatctta 686  Q
    |||| |||||||| || ||||||| ||| |||||||||||||||||| ||| |||||   ||||| |||||| ||||| | | ||||||||| |||| ||    
T  19602660 atgagttatagccttacattcatacttagattcaattatattagaaattaaccaattcactactgtcttgttcgaatgtaggtgagggttgttaatccta 19602561  T
Q  687 atattgctccatcta 701  Q
    |||||||| ||||||    
T  19602560 atattgcttcatcta 19602546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 595 - 701
Target Start/End: Complemental strand, 1002112 - 1002003
Alignment:
Q  595 ttatagccataaattcatagttaaattcaattatattagaaactaagcaatt---tactgccttgtttgaatggaagggagggttgtcaatcttaatatt 691  Q
    |||| |||||||||||||| |||  |||||||||||||||||||||||||||   || ||  |||||||||  || |  ||||||||||||| |||||||    
T  1002112 ttatggccataaattcatacttagtttcaattatattagaaactaagcaattcactattgttttgtttgaacagaggcaagggttgtcaatcctaatatt 1002013  T
Q  692 gctccatcta 701  Q
     |||||||||    
T  1002012 tctccatcta 1002003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 585 - 667
Target Start/End: Original strand, 20984837 - 20984922
Alignment:
Q  585 ttaagatgaattatagccataaattcatagttaaattcaattatattagaaactaagcaatt---tactgccttgtttgaatggaa 667  Q
    ||||||||| ||||| |  |||||||||| |||| ||||||||| |||||||||||||||||   ||||||||||||| |||||||    
T  20984837 ttaagatgagttataactctaaattcatacttaagttcaattattttagaaactaagcaattcactactgccttgtttcaatggaa 20984922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 767 - 862
Target Start/End: Original strand, 7023633 - 7023731
Alignment:
Q  767 ctttattaatagaatccaacaaataagaa-aggttcatcgaggaaccctaatcga-agaggttttgttgctcatgg-aaccgacatcattacaaaacaa 862  Q
    |||||||||| ||||||||||||||||||  ||||||||  |||||| ||||| | |||||||| ||||| ||||| ||||||| ||||||||||||||    
T  7023633 ctttattaattgaatccaacaaataagaatgggttcatcatggaaccataatcaagagaggtttagttgcacatggaaaccgacgtcattacaaaacaa 7023731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 767 - 863
Target Start/End: Original strand, 9782507 - 9782604
Alignment:
Q  767 ctttattaatagaatccaacaaataagaa-aggttcatcgaggaaccctaatcgaagaggttttgttgctcatg-gaaccgacatcattacaaaacaat 863  Q
    ||||||||||| | |||||||||||||||  ||||||||| |||||||||||| ||||||||| ||||||||||  |||  ||||||| ||||||||||    
T  9782507 ctttattaataaattccaacaaataagaaggggttcatcgtggaaccctaatc-aagaggtttagttgctcatgcaaacatacatcataacaaaacaat 9782604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 428 - 497
Target Start/End: Complemental strand, 13066906 - 13066837
Alignment:
Q  428 aagtgcaccaaatcgtacaaaataataaagtagtgagttaatcgtctcctcagagattgtcgttcaactc 497  Q
    ||||||| ||||| ||| ||| |||||||||||| |||||||||||||  |||||||| |||||||||||    
T  13066906 aagtgcaacaaattgtataaagtaataaagtagtaagttaatcgtctcaacagagattttcgttcaactc 13066837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 503 - 636
Target Start/End: Original strand, 17183764 - 17183900
Alignment:
Q  503 gaaagtagaatataatcccgtgatgaatcagtggaagttt-attaatc--ccccacaattaaaccatttacaattgtg-ggttccattaagatgaattat 598  Q
    |||||||||| |||| |  ||||||||| ||||||||||| ||| | |  |||||||||| ||||||| ||||||||  |||||| ||||||||| ||||    
T  17183764 gaaagtagaacataaacatgtgatgaattagtggaagttttatttaacgtccccacaattcaaccatt-acaattgtaaggttcccttaagatgagttat 17183862  T
Q  599 agccataaattcatagttaaattcaattatattagaaa 636  Q
    | || | |||||||| ||| | ||||||||||||||||    
T  17183863 atccctgaattcatacttagagtcaattatattagaaa 17183900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 428 - 498
Target Start/End: Complemental strand, 19603020 - 19602950
Alignment:
Q  428 aagtgcaccaaatcgtacaaaataataaagtagtgagttaatcgtctcctcagagattgtcgttcaactcg 498  Q
    ||||||| ||||| |||| || |||||||| ||| |||||||||||||| ||| |||| ||||||||||||    
T  19603020 aagtgcatcaaatagtaccaagtaataaagcagtaagttaatcgtctccacagggattatcgttcaactcg 19602950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 603 - 652
Target Start/End: Complemental strand, 1002224 - 1002175
Alignment:
Q  603 ataaattcatagttaaattcaattatattagaaactaagcaatttactgc 652  Q
    ||||||||||| ||||||| |||||||||||||||||| ||||| |||||    
T  1002224 ataaattcatacttaaatttaattatattagaaactaaacaattcactgc 1002175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 771 - 883
Target Start/End: Complemental strand, 24577037 - 24576924
Alignment:
Q  771 attaatagaatccaacaaataagaaaggttcatcgaggaaccctaatcgaagaggttttgttgctcatg-gaaccgacatcattacaaaacaat--tgaa 867  Q
    |||||||||||||||||||||||   |||| |||| ||||||||| |  |||||||||  |||||||||  ||||||  ||||||||||| |||   |||    
T  24577037 attaatagaatccaacaaataag--gggtttatcgtggaaccctagttaaagaggtttaattgctcatgacaaccgatgtcattacaaaataatagagaa 24576940  T
Q  868 acataccctagagaga 883  Q
    ||||||||||||||||    
T  24576939 acataccctagagaga 24576924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 809 - 863
Target Start/End: Complemental strand, 21047852 - 21047797
Alignment:
Q  809 aaccctaatcgaagaggttttgttgctcatgg-aaccgacatcattacaaaacaat 863  Q
    |||||||||| ||||||||| ||||| ||||| |||| ||||||||||||||||||    
T  21047852 aaccctaatcaaagaggtttagttgcacatggcaaccaacatcattacaaaacaat 21047797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 767 - 818
Target Start/End: Complemental strand, 22219404 - 22219353
Alignment:
Q  767 ctttattaatagaatccaacaaataagaaaggttcatcgaggaaccctaatc 818  Q
    |||||||||||  |||||||||||||||| ||||||||  ||||||||||||    
T  22219404 ctttattaataatatccaacaaataagaagggttcatcttggaaccctaatc 22219353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 422 - 476
Target Start/End: Original strand, 7023034 - 7023088
Alignment:
Q  422 attggtaagtgcaccaaatcgtacaaaataataaagtagtgagttaatcgtctcc 476  Q
    |||| ||||||||||||||||||  ||||||||||||||| |||| || ||||||    
T  7023034 attgataagtgcaccaaatcgtaacaaataataaagtagtaagtttattgtctcc 7023088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 420 - 466
Target Start/End: Original strand, 10450307 - 10450353
Alignment:
Q  420 aaattggtaagtgcaccaaatcgtacaaaataataaagtagtgagtt 466  Q
    ||||||| |||||||||||||||||  ||||||||||||||| ||||    
T  10450307 aaattggcaagtgcaccaaatcgtaacaaataataaagtagtaagtt 10450353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 778 - 882
Target Start/End: Complemental strand, 10577156 - 10577047
Alignment:
Q  778 gaatccaacaaataagaa-aggttcatcgaggaaccctaatcga-agaggttttgttgctcatgg-aaccgacatcattacaaaaca--attgaaacata 872  Q
    |||||||||||||||||| |||||||||  ||||||||| || | |||||||| ||||  ||||| |||  ||||||||||||||||  ||  |||||||    
T  10577156 gaatccaacaaataagaagaggttcatcatggaaccctagtcaatagaggtttagttggacatggcaacaaacatcattacaaaacaatataaaaacata 10577057  T
Q  873 ccctagagag 882  Q
    ||||||||||    
T  10577056 ccctagagag 10577047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 767 - 863
Target Start/End: Original strand, 20985020 - 20985118
Alignment:
Q  767 ctttattaatagaatccaacaaataagaaagg-ttcatcgaggaaccctaatcgaagaggttttgttgctcat-ggaaccgacatcattacaaaacaat 863  Q
    ||||||||| |||| |||||||||||||| || ||||||  |||||||||||| || |||||  ||| |||||   ||||| |||||||||||||||||    
T  20985020 ctttattaaaagaacccaacaaataagaagggattcatcatggaaccctaatcaaataggttcagttactcataacaaccggcatcattacaaaacaat 20985118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 503 - 545
Target Start/End: Complemental strand, 22120651 - 22120609
Alignment:
Q  503 gaaagtagaatataatcccgtgatgaatcagtggaagtttatt 545  Q
    |||| ||||| |||||||| |||||||||||||||||||||||    
T  22120651 gaaattagaacataatcccctgatgaatcagtggaagtttatt 22120609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 420 - 496
Target Start/End: Complemental strand, 51885938 - 51885861
Alignment:
Q  420 aaattggtaagtgcaccaaatcgtacaaaataataaagtagtgagttaatcg-tctcctcagagattgtcgttcaact 496  Q
    ||||||| ||||||||| |||||||  || |||||||||||| |||| || | ||||| ||| |||||||||||||||    
T  51885938 aaattggcaagtgcaccgaatcgtatcaagtaataaagtagtaagtttattgttctccacagggattgtcgttcaact 51885861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 8e-24; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 8e-24
Query Start/End: Original strand, 767 - 883
Target Start/End: Original strand, 14280696 - 14280816
Alignment:
Q  767 ctttattaatagaatccaacaaataagaa-aggttcatcgaggaaccctaatcgaagaggttttgttgctcatgg-aaccgacatcattacaaaacaatt 864  Q
    |||||||||||||||||||||||||||||  ||||||||| |||||| ||||| ||||||||| |||||| |||| |||||||| ||||||||| ||||     
T  14280696 ctttattaatagaatccaacaaataagaaggggttcatcgtggaaccttaatcaaagaggtttagttgcttatggcaaccgacaccattacaaagcaata 14280795  T
Q  865 g--aaacataccctagagaga 883  Q
    |  ||||||||||||||||||    
T  14280796 gaaaaacataccctagagaga 14280816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 523 - 702
Target Start/End: Original strand, 4597881 - 4598064
Alignment:
Q  523 tgatgaatcagtggaagttt-attaatcccccacaattaaaccatttacaattgtgggttccattaagatgaattatagccataaattcatagttaaatt 621  Q
    |||||||||||||||||||| ||| |  |||| ||||| || || |||||||||  |  | | ||||||||| |||||||| |||||||||| ||| |||    
T  4597881 tgatgaatcagtggaagttttatttaatccccgcaattcaagcacttacaattgcagcgttctttaagatgagttatagccctaaattcatacttagatt 4597980  T
Q  622 caattatattagaaactaagcaat---ttactgccttgtttgaatggaagggagggttgtcaatcttaatattgctccatctaa 702  Q
    |||   ||||||||||||| ||||   ||| |||||||||  |||| ||| || ||||||||||| ||||||||||| ||||||    
T  4597981 caaaattattagaaactaaccaattcattagtgccttgttacaatgaaagagaaggttgtcaatcctaatattgctctatctaa 4598064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 767 - 883
Target Start/End: Original strand, 22488276 - 22488395
Alignment:
Q  767 ctttattaatagaatccaacaaataagaaag-gttcatcgaggaaccctaatcgaagaggttttgttgctcatggaa-ccgacatcattacaaaacaatt 864  Q
    ||||||| || |||||||| ||||||||| | |||||||| |||||| |||||||||| |||| ||| |||||| || ||||||||||||||||||||||    
T  22488276 ctttattcatggaatccaa-aaataagaaggagttcatcgtggaaccataatcgaagaagtttagtttctcatgaaaaccgacatcattacaaaacaatt 22488374  T
Q  865 g--aaacataccctagagaga 883  Q
    |  ||||||| ||||||||||    
T  22488375 gaaaaacatatcctagagaga 22488395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 767 - 868
Target Start/End: Original strand, 5632021 - 5632124
Alignment:
Q  767 ctttattaatagaatccaacaaataagaaa-ggttcatcgaggaaccctaatcgaagaggttttgttgctcatgg-aaccgacatcattacaaaacaatt 864  Q
    |||||||||  ||||||||||||||||||| |||| |||| |||||||||||| |||| |||| ||| ||||||| || ||| ||||||||||||||||     
T  5632021 ctttattaacggaatccaacaaataagaaagggtttatcgtggaaccctaatcaaagaagtttagtttctcatggaaatcgatatcattacaaaacaata 5632120  T
Q  865 gaaa 868  Q
    ||||    
T  5632121 gaaa 5632124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 767 - 881
Target Start/End: Original strand, 8401811 - 8401929
Alignment:
Q  767 ctttattaatagaatccaacaaataagaa-aggttcatcgaggaaccctaatcgaagaggttttgttgctcatgg-aaccgacatcattacaaaaca--a 862  Q
    |||||||||| ||||||||||||||||||  ||||||||| |||||||||||  || | |||| ||||| ||||| ||||||||| |||||||||||  |    
T  8401811 ctttattaattgaatccaacaaataagaaggggttcatcgtggaaccctaataaaaaaagtttagttgcacatggcaaccgacattattacaaaacaata 8401910  T
Q  863 ttgaaacataccctagaga 881  Q
    |  ||||||||||||||||    
T  8401911 taaaaacataccctagaga 8401929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 579 - 691
Target Start/End: Original strand, 8714182 - 8714297
Alignment:
Q  579 gttccattaagatgaattatagccataaattcatagttaaattcaattatattagaaactaagcaatt---tactgccttgtttgaatggaagggagggt 675  Q
    ||||||||||||| | |||||||| |||||||||| ||| |||| ||||||||||||| ||| |||||   |||| |||||||  ||||||   ||||||    
T  8714182 gttccattaagattagttatagccctaaattcatacttagattctattatattagaaattaaacaattcgctacttccttgttcaaatggagacgagggt 8714281  T
Q  676 tgtcaatcttaatatt 691  Q
    |||||||| |||||||    
T  8714282 tgtcaatcctaatatt 8714297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 579 - 691
Target Start/End: Original strand, 9066069 - 9066184
Alignment:
Q  579 gttccattaagatgaattatagccataaattcatagttaaattcaattatattagaaactaagcaatt---tactgccttgtttgaatggaagggagggt 675  Q
    ||||||||||||| | |||||||| |||||||||| ||| |||| ||||||||||||| ||| |||||   |||| |||||||  ||||||   ||||||    
T  9066069 gttccattaagattagttatagccctaaattcatacttagattctattatattagaaattaaacaattcgctacttccttgttcaaatggagacgagggt 9066168  T
Q  676 tgtcaatcttaatatt 691  Q
    |||||||| |||||||    
T  9066169 tgtcaatcctaatatt 9066184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 577 - 642
Target Start/End: Complemental strand, 26298629 - 26298564
Alignment:
Q  577 gggttccattaagatgaattatagccataaattcatagttaaattcaattatattagaaactaagc 642  Q
    ||||||| ||||||||| ||||| || |||||||||| ||| ||||||||||||||||||||||||    
T  26298629 gggttcccttaagatgagttatatccctaaattcatacttagattcaattatattagaaactaagc 26298564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 603 - 701
Target Start/End: Original strand, 22488118 - 22488219
Alignment:
Q  603 ataaattcatagttaaattcaattatattagaaactaagcaatttact---gccttgtttgaatggaagggagggttgtcaatcttaatattgctccatc 699  Q
    ||||||||||| ||| ||| |||||||| |||||||||| |||| |||   | |||| | ||||||||| |||||||||||||| ||| |||||||||||    
T  22488118 ataaattcatacttatattaaattatatgagaaactaagtaattcactattgtcttgctcgaatggaagtgagggttgtcaatcctaagattgctccatc 22488217  T
Q  700 ta 701  Q
    ||    
T  22488218 ta 22488219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 550 - 646
Target Start/End: Original strand, 28730811 - 28730908
Alignment:
Q  550 ccccacaattaaaccatttacaattgtggg-ttccattaagatgaattatagccataaattcatagttaaattcaattatattagaaactaagcaatt 646  Q
    |||| ||||| || |||||||||||||||| |||| ||||||||| || || || |||||||||| ||| |||||||||  ||||||||||| |||||    
T  28730811 ccccgcaattcaatcatttacaattgtggggttcccttaagatgagttgtaaccttaaattcatacttagattcaattaatttagaaactaaacaatt 28730908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 767 - 868
Target Start/End: Complemental strand, 26419458 - 26419354
Alignment:
Q  767 ctttattaatagaatccaacaaataagaa-aggttcatcgaggaaccctaat-cgaagaggttttgttgctcatgg-aaccgacatcattacaaaacaat 863  Q
    |||| ||||| ||||||||||||||||||  ||||||||| |||||| |||| | |||| |||| ||||| ||||| |||| ||||||||||||||||||    
T  26419458 cttttttaattgaatccaacaaataagaaggggttcatcgtggaaccgtaatacaaagatgtttagttgcacatggcaaccaacatcattacaaaacaat 26419359  T
Q  864 tgaaa 868  Q
     ||||    
T  26419358 agaaa 26419354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 769 - 868
Target Start/End: Complemental strand, 18474910 - 18474808
Alignment:
Q  769 ttattaatagaatccaacaaataagaaa--ggttcatcgaggaaccctaatcgaagaggttttgttgctcat-ggaaccgacatcattacaaaacaattg 865  Q
    ||||||||| ||||||||||| ||  ||  ||||||||| |||||| ||||| ||||||||| |||||||||   ||| |||||||||||||| |||| |    
T  18474910 ttattaatacaatccaacaaaaaaataaggggttcatcgtggaaccataatcaaagaggtttagttgctcataaaaacagacatcattacaaaccaatag 18474811  T
Q  866 aaa 868  Q
    |||    
T  18474810 aaa 18474808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 421 - 476
Target Start/End: Original strand, 19541924 - 19541979
Alignment:
Q  421 aattggtaagtgcaccaaatcgtacaaaataataaagtagtgagttaatcgtctcc 476  Q
    ||||||||||||||  ||||||||  || |||||||||||| ||||||||||||||    
T  19541924 aattggtaagtgcattaaatcgtatcaagtaataaagtagtaagttaatcgtctcc 19541979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 774 - 863
Target Start/End: Complemental strand, 26298478 - 26298388
Alignment:
Q  774 aatagaatccaacaaataagaaaggtt-catcgaggaaccctaatcgaagaggttttgttgctcatgg-aaccgacatcattacaaaacaat 863  Q
    |||||||||||||||||| ||| || | ||||| |||||||||||| ||||  |||||||  |||||| |||| ||||||||||||||||||    
T  26298478 aatagaatccaacaaatatgaaggggtacatcgtggaaccctaatcaaagatattttgtta-tcatggcaaccaacatcattacaaaacaat 26298388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 434 - 476
Target Start/End: Original strand, 13586026 - 13586068
Alignment:
Q  434 accaaatcgtacaaaataataaagtagtgagttaatcgtctcc 476  Q
    |||||||||||  ||||||||||||||| ||||||||||||||    
T  13586026 accaaatcgtatcaaataataaagtagtaagttaatcgtctcc 13586068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 769 - 826
Target Start/End: Original strand, 19263295 - 19263353
Alignment:
Q  769 ttattaatagaatccaacaaataagaa-aggttcatcgaggaaccctaatcgaagaggt 826  Q
    |||||| |||||||||||||||||||| |||||||||   ||||||||||| |||||||    
T  19263295 ttattactagaatccaacaaataagaagaggttcatcttagaaccctaatcaaagaggt 19263353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 767 - 870
Target Start/End: Original strand, 23907695 - 23907801
Alignment:
Q  767 ctttattaatagaatccaacaaataag-aaaggttcatcgaggaaccctaatc-gaagaggttttgttgctcatgg-aaccgacatcattacaaaacaat 863  Q
    ||||||||||  ||||||||||||||| | | ||||||||  |||||||||||  ||||||||| ||| | ||||| || |||||||| |||||||||||    
T  23907695 ctttattaattaaatccaacaaataagtagaagttcatcgttgaaccctaatcaaaagaggtttagttacacatggtaatcgacatcaatacaaaacaat 23907794  T
Q  864 tgaaaca 870  Q
     ||||||    
T  23907795 agaaaca 23907801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 767 - 836
Target Start/End: Original strand, 33914010 - 33914078
Alignment:
Q  767 ctttattaatagaatccaacaaataagaaaggttcatcgaggaaccctaatcgaagaggttttgttgctc 836  Q
    ||||||||||||| || |||||||||||| ||||||||  | || ||||||| ||||||||| |||||||    
T  33914010 ctttattaatagattcgaacaaataagaagggttcatcttgaaagcctaatc-aagaggtttagttgctc 33914078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186 (Bit Score: 55; Significance: 5e-22; HSPs: 2)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 555 - 703
Target Start/End: Original strand, 32936 - 33087
Alignment:
Q  555 caattaaaccatttacaattgtggg-ttccattaagatgaattatagccataaattcatagttaaattcaattatattagaaactaagcaatt---tact 650  Q
    ||||| ||||||||||||||||||| |||| |||| |||| |||||||| |||| ||||| |||  ||||||||||||||||| |||||||||   ||||    
T  32936 caattcaaccatttacaattgtggggttcccttaaaatgagttatagccctaaaatcatacttag-ttcaattatattagaaattaagcaattcactact 33034  T
Q  651 gccttgtttgaatggaagggagggttgtcaatcttaatattgctccatctaag 703  Q
     |||||| |||||||| | || ||||||| ||| || ||||||||||||||||    
T  33035 cccttgtgtgaatggaggcgaaggttgtcgatcctattattgctccatctaag 33087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186; HSP #2
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 767 - 868
Target Start/End: Original strand, 33151 - 33254
Alignment:
Q  767 ctttattaatagaatccaacaaataagaaagg-ttcatcgaggaaccctaatcgaagaggttttgttgctcatgg-aaccgacatcattacaaaacaatt 864  Q
    ||||||||| ||||||||||||||||||| || ||||||  |||||||||||| |||||| || |||  |||||| |||||||||||||||||||||||     
T  33151 ctttattaaaagaatccaacaaataagaagggcttcatcatggaaccctaatcaaagaggattagtttatcatggcaaccgacatcattacaaaacaata 33250  T
Q  865 gaaa 868  Q
    ||||    
T  33251 gaaa 33254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 5e-22; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 555 - 703
Target Start/End: Complemental strand, 18771855 - 18771704
Alignment:
Q  555 caattaaaccatttacaattgtggg-ttccattaagatgaattatagccataaattcatagttaaattcaattatattagaaactaagcaatt---tact 650  Q
    ||||| ||||||||||||||||||| |||| |||| |||| ||||| || ||||||||||   || |||||||||||||||||||||||||||   ||||    
T  18771855 caattgaaccatttacaattgtggggttcccttaaaatgagttatatccctaaattcatacc-aagttcaattatattagaaactaagcaattcactact 18771757  T
Q  651 gccttgtttgaatggaagggagggttgtcaatcttaatattgctccatctaag 703  Q
     ||||||||||||||| | || ||||||| ||| || |||||||| |||||||    
T  18771756 accttgtttgaatggaggcgaaggttgtcgatcctattattgctcgatctaag 18771704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 768 - 863
Target Start/End: Original strand, 6887612 - 6887709
Alignment:
Q  768 tttattaatagaatccaacaaataagaa-aggttcatcgaggaaccctaatcgaagaggttttgttgctcatgg-aaccgacatcattacaaaacaat 863  Q
    ||||||||| |||| ||||||||| ||| ||| |||||| |||||||||||| ||||||||| ||||| ||||| |||||||||||||||||||||||    
T  6887612 tttattaattgaattcaacaaatatgaagaggatcatcgtggaaccctaatcaaagaggtttagttgcacatggcaaccgacatcattacaaaacaat 6887709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 767 - 868
Target Start/End: Complemental strand, 18771640 - 18771537
Alignment:
Q  767 ctttattaatagaatccaacaaataagaaagg-ttcatcgaggaaccctaatcgaagaggttttgttgctcatgg-aaccgacatcattacaaaacaatt 864  Q
    ||||||||| ||||||||||||||||||| || ||||||| |||| ||||||| |||||| || |||  |||||| |||||||||||||||||||||||     
T  18771640 ctttattaaaagaatccaacaaataagaagggcttcatcgtggaatcctaatcaaagaggattagtttatcatggcaaccgacatcattacaaaacaata 18771541  T
Q  865 gaaa 868  Q
    ||||    
T  18771540 gaaa 18771537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 555 - 646
Target Start/End: Original strand, 13582804 - 13582896
Alignment:
Q  555 caattaaaccatttacaattgtggg-ttccattaagatgaattatagccataaattcatagttaaattcaattatattagaaactaagcaatt 646  Q
    ||||| |||||||||||||| |||| |||   |||||||| |||||||| |||||||||| ||| |||||||||| |||||||||||||||||    
T  13582804 caattcaaccatttacaattatgggattctcgtaagatgagttatagccttaaattcatacttatattcaattattttagaaactaagcaatt 13582896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 768 - 862
Target Start/End: Complemental strand, 5154479 - 5154383
Alignment:
Q  768 tttattaatagaatccaacaaataagaa-aggttcatcgaggaaccctaatcgaagaggttttgttgctcatg-gaaccgacatcattacaaaacaa 862  Q
    ||||||||| ||||||||||||||| ||  ||||||||| |||||| ||||| || |||||| ||||||||||  ||||||||||||| ||||||||    
T  5154479 tttattaattgaatccaacaaataataaggggttcatcgtggaaccttaatcaaataggtttagttgctcatgacaaccgacatcattgcaaaacaa 5154383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 767 - 863
Target Start/End: Original strand, 27084978 - 27085076
Alignment:
Q  767 ctttattaatagaatccaacaaataagaaa-ggttcatcgaggaaccctaatcgaagaggttttgttgctcatg-gaaccgacatcattacaaaacaat 863  Q
    |||||||||| || |||||||||||| ||| ||||||||| | | |||||||| ||||||||| ||||||||||  |||||||||| ||| ||||||||    
T  27084978 ctttattaattgagtccaacaaataaaaaagggttcatcgtgaagccctaatcaaagaggtttagttgctcatgacaaccgacatcgttaaaaaacaat 27085076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 624 - 701
Target Start/End: Complemental strand, 30544585 - 30544505
Alignment:
Q  624 attatattagaaactaagcaatttact---gccttgtttgaatggaagggagggttgtcaatcttaatattgctccatcta 701  Q
    ||||||||||||||||||||||| |||   |||||||| | ||||| | || ||||||||||| |||||||||||||||||    
T  30544585 attatattagaaactaagcaattcactattgccttgttcggatggaggtgaaggttgtcaatcctaatattgctccatcta 30544505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 503 - 613
Target Start/End: Complemental strand, 18789842 - 18789728
Alignment:
Q  503 gaaagtagaatataatcccgtgatgaatcagtggaagtttatt--aatccccca-caattaaaccatttacaattgt-gggttccattaagatgaattat 598  Q
    ||||||| || ||||  ||||||||||| ||||||||||||||  |||  |||  ||||| || ||||||||||||| ||||||| ||||||||| ||||    
T  18789842 gaaagtataacataactccgtgatgaattagtggaagtttattttaatatccctgcaattcaatcatttacaattgtggggttcccttaagatgagttat 18789743  T
Q  599 agccataaattcata 613  Q
    |||| ||||||||||    
T  18789742 agccctaaattcata 18789728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 769 - 957
Target Start/End: Original strand, 30850462 - 30850658
Alignment:
Q  769 ttattaatagaatccaacaaataagaaag-gttcatcgaggaaccctaatcgaagaggttttgttgctcatgg-aaccgacatcattacaaaacaattga 866  Q
    |||||||  ||||| || ||||||||| | |||||||  | |||| ||||| ||||||||| ||||| ||||  |||  ||| |||||||||||||| ||    
T  30850462 ttattaaatgaatcaaaaaaataagaaggagttcatcttgaaaccttaatcaaagaggtttagttgcacatgacaactaacaacattacaaaacaataga 30850561  T
Q  867 aa--cataccctagagagac--atagaaagatgga--tcctctgccttgaacttgtgatgattgacctttgccttgtaccgctagccttctgaatga 957  Q
    ||  |||||||||||||||   |||| | ||||||  ||||||||||| ||  | | ||| |||||| |||||||||||||||||| ||||||||||    
T  30850562 aaaacataccctagagagaacaataggaggatggagatcctctgccttaaatctcttatgtttgacccttgccttgtaccgctagctttctgaatga 30850658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 555 - 646
Target Start/End: Complemental strand, 11438319 - 11438227
Alignment:
Q  555 caattaaaccatttacaattgtggg-ttccattaagatgaattatagccataaattcatagttaaattcaattatattagaaactaagcaatt 646  Q
    ||||| |||||||||||||| |||| |||| ||||||||| ||| | || |||||||||| ||| ||| ||| |  |||||||||||||||||    
T  11438319 caattcaaccatttacaattttggggttcccttaagatgagttaaaaccctaaattcatacttatatttaatcaatttagaaactaagcaatt 11438227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 420 - 496
Target Start/End: Original strand, 16048624 - 16048700
Alignment:
Q  420 aaattggtaagtgcaccaaatcgtacaaaataataaagtagtgagttaatcgtctcctcagagattgtcgttcaact 496  Q
    ||||||| ||||||||||||  |||  ||| ||| ||||||| |||| ||||||||||  |||||||||||||||||    
T  16048624 aaattggaaagtgcaccaaaatgtaacaaacaatcaagtagtaagtttatcgtctcctttgagattgtcgttcaact 16048700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 767 - 868
Target Start/End: Original strand, 12774270 - 12774373
Alignment:
Q  767 ctttattaatagaatccaacaaataagaaa-ggttcatcgaggaaccctaatcgaagaggttttgttgctcatgg-aaccgacatcattacaaaacaatt 864  Q
    ||||| |||| ||||| ||||||||| ||| ||||||||  |||||| | ||| ||||||||| ||||| ||||| ||||  |||||||||||||||||     
T  12774270 ctttactaattgaatctaacaaataataaaaggttcatcttggaaccttgatcaaagaggtttagttgcacatggcaaccttcatcattacaaaacaata 12774369  T
Q  865 gaaa 868  Q
    ||||    
T  12774370 gaaa 12774373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 768 - 834
Target Start/End: Complemental strand, 24120963 - 24120896
Alignment:
Q  768 tttattaatagaatccaacaaataagaaag-gttcatcgaggaaccctaatcgaagaggttttgttgc 834  Q
    ||||||||| |||||||||||||||||| | |||||||  |||||||| ||| ||||||||| |||||    
T  24120963 tttattaatggaatccaacaaataagaaggagttcatcttggaaccctgatcaaagaggtttagttgc 24120896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 767 - 837
Target Start/End: Complemental strand, 32239970 - 32239900
Alignment:
Q  767 ctttattaatagaatccaacaaataagaa-aggttcatcgaggaaccctaatcgaagaggttttgttgctca 837  Q
    |||||||||| |||||||||||||||||| |||||||||    |||||||||| ||||||||| ||||||||    
T  32239970 ctttattaattgaatccaacaaataagaagaggttcatcttaaaaccctaatc-aagaggtttagttgctca 32239900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 767 - 828
Target Start/End: Complemental strand, 14184628 - 14184566
Alignment:
Q  767 ctttattaatagaatccaacaaataagaa-aggttcatcgaggaaccctaatcgaagaggttt 828  Q
    |||||||||| |||||||||||||||||| ||| |||| | ||||| |||||| |||||||||    
T  14184628 ctttattaattgaatccaacaaataagaagaggatcatagtggaactctaatcaaagaggttt 14184566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 783 - 863
Target Start/End: Complemental strand, 30544424 - 30544342
Alignment:
Q  783 caacaaataagaa-aggttcatcgaggaaccctaatcgaagaggttttgttgctcatgg-aaccgacatcattacaaaacaat 863  Q
    ||||||||||||| || ||||||  |||||||||||| || |||||  ||||||||||| ||||  |||||||||||||||||    
T  30544424 caacaaataagaagagattcatcatggaaccctaatcaaataggttcagttgctcatggcaaccaccatcattacaaaacaat 30544342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 420 - 496
Target Start/End: Complemental strand, 26853663 - 26853586
Alignment:
Q  420 aaattggtaagtgcaccaaatcgtacaaaataataaagtagtgagttaatcg-tctcctcagagattgtcgttcaact 496  Q
    ||||||| || ||||||||||||||  || |||||||||||| |||| |||| ||||| ||| ||| |||||||||||    
T  26853663 aaattggaaaatgcaccaaatcgtaacaagtaataaagtagtaagttcatcgttctccacagggatagtcgttcaact 26853586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 421 - 498
Target Start/End: Original strand, 27117426 - 27117503
Alignment:
Q  421 aattggtaagtgcaccaaatcgtacaaaataataaagtagtgagttaatcgtctcctcagagattgtcgttcaactcg 498  Q
    |||||| || ||||||||||||||  || |||||||||||| |||||||||||  | ||  ||| |||||||||||||    
T  27117426 aattggcaaatgcaccaaatcgtatcaagtaataaagtagtaagttaatcgtcctcacaaggatcgtcgttcaactcg 27117503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 767 - 883
Target Start/End: Original strand, 28900732 - 28900850
Alignment:
Q  767 ctttattaatagaatccaacaaataagaa-aggttcatcgaggaaccctaatcgaagaggttttgttgctca-tggaaccgacatcattacaaaacaatt 864  Q
    |||||||||||  || |||||||||||||  ||||||||| |||| || |||| ||||||||| |||||||| || ||| |||||||| ||||||||||     
T  28900732 ctttattaataatattcaacaaataagaaggggttcatcgtggaa-ccgaatc-aagaggtttagttgctcagtgcaacagacatcataacaaaacaata 28900829  T
Q  865 g--aaacataccctagagaga 883  Q
    |  ||||||| ||||||||||    
T  28900830 gaaaaacatatcctagagaga 28900850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 5e-22; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 768 - 868
Target Start/End: Original strand, 19257371 - 19257473
Alignment:
Q  768 tttattaatagaatccaacaaataagaaagg-ttcatcgaggaaccctaatcgaagaggttttgttgctcatg-gaaccgacatcattacaaaacaattg 865  Q
    ||||||||| |||||||||||||||||| || ||||||  |||||||||||| ||||||||| ||||||||||  ||||||||||||||||||||||| |    
T  19257371 tttattaattgaatccaacaaataagaaggggttcatcttggaaccctaatcaaagaggtttagttgctcatgacaaccgacatcattacaaaacaatag 19257470  T
Q  866 aaa 868  Q
    |||    
T  19257471 aaa 19257473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 767 - 868
Target Start/End: Original strand, 52270627 - 52270731
Alignment:
Q  767 ctttattaatagaatccaacaaataagaaagg--ttcatcgaggaaccctaatcgaagaggttttgttgctcatgg-aaccgacatcattacaaaacaat 863  Q
    ||||||||| ||||||||| ||||||||| ||  ||||||| |||||||||||| || | |||| ||| ||||||| |||||||||||||||||||||||    
T  52270627 ctttattaaaagaatccaaaaaataagaagggggttcatcgtggaaccctaatcaaataagtttagtttctcatggcaaccgacatcattacaaaacaat 52270726  T
Q  864 tgaaa 868  Q
     ||||    
T  52270727 agaaa 52270731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 770 - 883
Target Start/End: Complemental strand, 21549351 - 21549237
Alignment:
Q  770 tattaatagaatccaacaaataagaaagg-ttcatcgaggaaccctaatcgaagaggttttgttgctcatg-gaaccgacatcattacaaaacaattg-- 865  Q
    |||||||||||||||||||||||||| || ||||||| ||||||||||   ||||| ||| |||| |||||  | ||||||||||||||||||||| |      
T  21549351 tattaatagaatccaacaaataagaagggtttcatcgtggaaccctaa---aagagatttagttgttcatgacagccgacatcattacaaaacaatagaa 21549255  T
Q  866 aaacataccctagagaga 883  Q
    ||||||||||||||||||    
T  21549254 aaacataccctagagaga 21549237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 504 - 650
Target Start/End: Complemental strand, 21549626 - 21549472
Alignment:
Q  504 aaagtagaatataatcccgtgatgaatcagtggaagtt-tattaatc--ccccacaattaaaccatttacaattgtggg-ttccattaagatgaattata 599  Q
    |||||| || |||| || ||||| |||||||||||||| |||| | |  |||||||||| || || || |||||||||| |||| ||||||||| || ||    
T  21549626 aaagtataacataaccctgtgattaatcagtggaagttgtatttaacgtccccacaattcaatcacttgcaattgtggggttcccttaagatgagttgta 21549527  T
Q  600 gccata----aattcatagttaaattcaattatattagaaactaagcaatttact 650  Q
    ||| ||    |||||||| ||| ||||||||||||||||||||||| ||||||||    
T  21549526 gccctagctaaattcatacttagattcaattatattagaaactaagaaatttact 21549472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 779 - 868
Target Start/End: Original strand, 14744864 - 14744955
Alignment:
Q  779 aatccaacaaataagaaag-gttcatcgaggaaccctaatcgaagaggttttgttgctcatgg-aaccgacatcattacaaaacaattgaaa 868  Q
    ||||||| ||||||||||  |||||||  ||||||||| || ||||||||| ||||| ||||  ||||||||||||||||||||||| ||||    
T  14744864 aatccaataaataagaaaaagttcatcttggaaccctagtcaaagaggtttagttgcacatgacaaccgacatcattacaaaacaatagaaa 14744955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 767 - 883
Target Start/End: Complemental strand, 50047796 - 50047675
Alignment:
Q  767 ctttattaatagaatccaacaaataagaa-aggttcatcgaggaaccctaatcgaagaggttttgttgctcatggaacc--gacatcattacaaaaca-- 861  Q
    |||||||||| ||||||||||||||||||  ||||||||    ||| |||||| ||||||||| ||||||||||| | |   ||||||||||||||||      
T  50047796 ctttattaattgaatccaacaaataagaaggggttcatcttataactctaatcaaagaggtttagttgctcatggcaacaaaacatcattacaaaacaat 50047697  T
Q  862 attgaaacataccctagagaga 883  Q
    ||  ||||||||||||||||||    
T  50047696 ataaaaacataccctagagaga 50047675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 767 - 840
Target Start/End: Complemental strand, 12810866 - 12810793
Alignment:
Q  767 ctttattaatagaatccaacaaataagaaag-gttcatcgaggaaccctaatcgaagaggttttgttgctcatgg 840  Q
    ||||||||||   |||||||||||||||| | |||||||  |||||||||||| |||||||||||||||||||||    
T  12810866 ctttattaattatatccaacaaataagaaggagttcatcatggaaccctaatc-aagaggttttgttgctcatgg 12810793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 767 - 884
Target Start/End: Complemental strand, 30676133 - 30676013
Alignment:
Q  767 ctttattaatagaatccaacaaataagaa-aggttcatcgaggaaccctaatcgaagaggttttgttgctcatgg-aaccgacatcattacaaaacaatt 864  Q
    |||||||||| ||||||||||||||||||  ||||||||   ||||| ||||| |||| |||  ||||||||||| |||  ||||||| ||||||||||     
T  30676133 ctttattaattgaatccaacaaataagaaggggttcatcttcgaaccttaatc-aagaagttaagttgctcatggcaacaaacatcataacaaaacaata 30676035  T
Q  865 g--aaacataccctagagagac 884  Q
    |  |||||||||||||||||||    
T  30676034 gaaaaacataccctagagagac 30676013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 421 - 498
Target Start/End: Original strand, 25664822 - 25664899
Alignment:
Q  421 aattggtaagtgcaccaaatcgtacaaaataataaagtagtgagttaatcgtctcctcagagattgtcgttcaactcg 498  Q
    |||||| |||||||||||||| ||  || |||||||||||| |||||||| ||||   || |||||||||||||||||    
T  25664822 aattggcaagtgcaccaaatcatatcaagtaataaagtagtaagttaatcatctcgatagggattgtcgttcaactcg 25664899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 767 - 835
Target Start/End: Original strand, 25665194 - 25665263
Alignment:
Q  767 ctttattaatagaatccaacaaataagaa-aggttcatcgaggaaccctaatcgaagaggttttgttgct 835  Q
    |||||| |||||||| |||||||||||||  ||||||||| |||||| ||||| ||||||||| ||||||    
T  25665194 ctttatcaatagaattcaacaaataagaaggggttcatcgtggaaccttaatcaaagaggtttagttgct 25665263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 771 - 823
Target Start/End: Complemental strand, 25374251 - 25374199
Alignment:
Q  771 attaatagaatccaacaaataagaaaggttcatcgaggaaccctaatcgaaga 823  Q
    |||||| ||||||||||||||| |||||||||| | |||||||||||| ||||    
T  25374251 attaattgaatccaacaaataataaaggttcatagtggaaccctaatcaaaga 25374199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 634 - 701
Target Start/End: Original strand, 52270492 - 52270562
Alignment:
Q  634 aaactaagcaatt---tactgccttgtttgaatggaagggagggttgtcaatcttaatattgctccatcta 701  Q
    |||||||||||||   ||||||||| || ||||||| | |||||||||||||| |||||||| ||||||||    
T  52270492 aaactaagcaattcactactgcctttttcgaatggaggcgagggttgtcaatcctaatattgttccatcta 52270562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 421 - 496
Target Start/End: Original strand, 23420485 - 23420559
Alignment:
Q  421 aattggtaagtgcaccaaatcgtacaaaataataaagtagtgagttaatcgtctcctcagagattgtcgttcaact 496  Q
    |||||| ||||| |||||||||||  || |||||||||||| |||| ||||||||| ||  |||||||||||||||    
T  23420485 aattggcaagtgtaccaaatcgtaacaagtaataaagtagtaagtt-atcgtctccacaaggattgtcgttcaact 23420559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 767 - 852
Target Start/End: Original strand, 23521140 - 23521226
Alignment:
Q  767 ctttattaatagaatccaacaaataagaa-aggttcatcgaggaaccctaatcgaagaggttttgttgctcatgg-aaccgacatcat 852  Q
    |||||||||||  |||||||||||||||| |||||||||  |||||||||||| ||||||||| ||  ||||||| ||| ||||||||    
T  23521140 ctttattaataagatccaacaaataagaagaggttcatcttggaaccctaatc-aagaggtttagtctctcatggtaacagacatcat 23521226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 435 - 498
Target Start/End: Original strand, 25132653 - 25132716
Alignment:
Q  435 ccaaatcgtacaaaataataaagtagtgagttaatcgtctcctcagagattgtcgttcaactcg 498  Q
    ||||||||||| |||||||||| || | |||||||| ||||| ||  |||||||||||||||||    
T  25132653 ccaaatcgtactaaataataaattaataagttaatcatctccacatggattgtcgttcaactcg 25132716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 504 - 646
Target Start/End: Complemental strand, 25778683 - 25778537
Alignment:
Q  504 aaagtagaatataatcccgtgatgaatcagtggaagttta-ttaat--cccccacaattaaaccatttacaattg-tgggttccattaagatgaattata 599  Q
    ||||||||| |||| ||||||||||| ||||||||||||| || ||   |||  ||||| |||||||||   ||| | | |||| ||||||||| |||||    
T  25778683 aaagtagaacataaccccgtgatgaaccagtggaagtttattttattatccctgcaattcaaccatttattgttgttagattcccttaagatgagttata 25778584  T
Q  600 gccataaattcatagttaaattcaattatattagaaactaagcaatt 646  Q
    ||| |||||||||| ||| |||||||||  |||||||  ||||||||    
T  25778583 gccctaaattcataattagattcaattaatttagaaatcaagcaatt 25778537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 417 - 472
Target Start/End: Original strand, 33083610 - 33083665
Alignment:
Q  417 ggtaaattggtaagtgcaccaaatcgtacaaaataataaagtagtgagttaatcgt 472  Q
    ||||| |||| ||||||| ||||||||||||| ||||| |||||| ||||||||||    
T  33083610 ggtaatttggcaagtgcatcaaatcgtacaaagtaatagagtagtaagttaatcgt 33083665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 767 - 862
Target Start/End: Original strand, 15416445 - 15416543
Alignment:
Q  767 ctttattaatagaatccaacaaataag-aaaggttcatcgaggaaccctaatcga-agaggttttgttgctcatg-gaaccgacatcattacaaaacaa 862  Q
    |||||||| | |||||||||||||||| | |||||||||| |||||||||||  | |||||||| ||| | ||||  |||||||||| |||||||||||    
T  15416445 ctttattagttgaatccaacaaataagtagaggttcatcgtggaaccctaattaatagaggtttagttacacatgacaaccgacatctttacaaaacaa 15416543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 580 - 646
Target Start/End: Complemental strand, 25731200 - 25731134
Alignment:
Q  580 ttccattaagatgaattatagccataaattcatagttaaattcaattatattagaaactaagcaatt 646  Q
    |||| ||||||||| |||||||  |||||||||| ||| |||||||||  ||| |||||||||||||    
T  25731200 ttcccttaagatgagttatagctctaaattcataattagattcaattaatttaaaaactaagcaatt 25731134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 503 - 545
Target Start/End: Original strand, 52269605 - 52269647
Alignment:
Q  503 gaaagtagaatataatcccgtgatgaatcagtggaagtttatt 545  Q
    ||||||| || ||||||| ||||||||||||||||||||||||    
T  52269605 gaaagtataacataatcctgtgatgaatcagtggaagtttatt 52269647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 577 - 639
Target Start/End: Original strand, 52269680 - 52269742
Alignment:
Q  577 gggttccattaagatgaattatagccataaattcatagttaaattcaattatattagaaacta 639  Q
    ||||||| |||||||||  ||||||| || ||||||| ||| |||||||||||||| ||||||    
T  52269680 gggttcccttaagatgagctatagccctatattcatacttagattcaattatattaaaaacta 52269742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 587 - 628
Target Start/End: Complemental strand, 14581019 - 14580978
Alignment:
Q  587 aagatgaattatagccataaattcatagttaaattcaattat 628  Q
    ||||||| ||||||||||||||||||| ||| ||||||||||    
T  14581019 aagatgagttatagccataaattcatacttagattcaattat 14580978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 423 - 496
Target Start/End: Complemental strand, 23506864 - 23506792
Alignment:
Q  423 ttggtaagtgcaccaaatcgtacaaaataataaagtagtgagttaatcgtctcctcagagattgtcgttcaact 496  Q
    |||| |||| ||||||||||||  ||||||||||||||| |||| ||||||||  ||| || ||||||||||||    
T  23506864 ttggcaagttcaccaaatcgtattaaataataaagtagtaagtt-atcgtctctacagtgaatgtcgttcaact 23506792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 8e-21; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 768 - 883
Target Start/End: Original strand, 5312186 - 5312305
Alignment:
Q  768 tttattaatagaatccaacaaataagaaagg-ttcatcgaggaaccctaatcgaagaggttttgttgctcatgg-aaccgacatcattacaaaacaattg 865  Q
    ||||| ||| |||||||||||||||||| || |||||||  ||| ||||||| ||||||||| ||||| ||||  |||||||||||||||||||||||||    
T  5312186 tttatcaattgaatccaacaaataagaatgggttcatcgtagaatcctaatcaaagaggtttagttgcacatgacaaccgacatcattacaaaacaattg 5312285  T
Q  866 --aaacataccctagagaga 883  Q
      ||||||||||||||||||    
T  5312286 aaaaacataccctagagaga 5312305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 767 - 864
Target Start/End: Complemental strand, 30406280 - 30406181
Alignment:
Q  767 ctttattaatagaatccaacaaataagaa-aggttcatcgaggaaccctaatcgaagaggttttgttgctcatgg-aaccgacatcattacaaaacaatt 864  Q
    |||||||||| ||||||||||||| ||||  ||||||||| |||||| ||||| ||||||||| |||||| |||| |||| |||||||||||||||||||    
T  30406280 ctttattaattgaatccaacaaatgagaaggggttcatcgtggaaccataatcaaagaggtttagttgcttatggcaaccaacatcattacaaaacaatt 30406181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 767 - 863
Target Start/End: Original strand, 24596402 - 24596500
Alignment:
Q  767 ctttattaatagaatccaacaaataagaa-aggttcatcgaggaaccctaatcgaagaggttttgttgctcat-ggaaccgacatcattacaaaacaat 863  Q
    ||||||||||||||| |||||||||||||  ||||||||| ||||| |||||  ||||||||| |||||||||   |||||||||||||| ||||||||    
T  24596402 ctttattaatagaattcaacaaataagaatgggttcatcgtggaactctaattaaagaggtttggttgctcataacaaccgacatcattataaaacaat 24596500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 409 - 497
Target Start/End: Original strand, 22271046 - 22271134
Alignment:
Q  409 tgattttaggtaaattggtaagtgcaccaaatcgtacaaaataataaagtagtgagttaatcgtctcctcagagattgtcgttcaactc 497  Q
    |||||||||  ||||||| ||||||| |||||||| |||| |||||| ||||| |||||||||||| |  || ||||||||||||||||    
T  22271046 tgattttagtgaaattggcaagtgcatcaaatcgtgcaaagtaataaggtagtaagttaatcgtcttcatagggattgtcgttcaactc 22271134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 619 - 701
Target Start/End: Complemental strand, 15758281 - 15758196
Alignment:
Q  619 attcaattatattagaaactaagcaatttactgc---cttgtttgaatggaagggagggttgtcaatcttaatattgctccatcta 701  Q
    |||||||||||||| ||||||||||||| |||     |||||||||||||| | ||||||||| |||| |||||||||||||||||    
T  15758281 attcaattatattataaactaagcaattcactattatcttgtttgaatggaggcgagggttgttaatcctaatattgctccatcta 15758196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 587 - 701
Target Start/End: Original strand, 21544117 - 21544234
Alignment:
Q  587 aagatgaattatagccataaattcatagttaaattcaattatattagaaactaagcaatt---tactgccttgtttgaatggaagggagggttgtcaatc 683  Q
    ||||||| |||||||||||||||||  |||| |||||||| ||||| |||||||||||||   ||||   ||||| ||||||| |  |||||||||||||    
T  21544117 aagatgacttatagccataaattcaaggttagattcaattgtattataaactaagcaattcactacttttttgttcgaatggaggtcagggttgtcaatc 21544216  T
Q  684 ttaatattgctccatcta 701  Q
     |||| ||||| ||||||    
T  21544217 ctaatgttgctgcatcta 21544234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 767 - 868
Target Start/End: Original strand, 21544299 - 21544399
Alignment:
Q  767 ctttattaatagaatccaacaaataagaaagg-ttcatcgaggaaccctaatcgaagaggttttgttgctcatggaaccgacatcattacaaaacaattg 865  Q
    ||||| |||| |||||||||||||||||| || ||||||  |||||||||||| |||| |||| |||||||||  |||| | |||||||||||||||| |    
T  21544299 ctttagtaatggaatccaacaaataagaaggggttcatcatggaaccctaatcaaagaagtttagttgctcat--aacctatatcattacaaaacaatag 21544396  T
Q  866 aaa 868  Q
    |||    
T  21544397 aaa 21544399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 767 - 883
Target Start/End: Complemental strand, 9760808 - 9760688
Alignment:
Q  767 ctttattaatagaatccaacaaataagaa-aggttcatcgaggaaccctaatcgaagaggttttgttgctcatggaa-ccgacatcattacaaaacaatt 864  Q
    ||||||||| |||||||||||||||||||  ||||||||| | | ||||| || ||||||||| || |||| ||||| | ||||||||||||||| |||     
T  9760808 ctttattaaaagaatccaacaaataagaaggggttcatcgtgaagccctactcaaagaggtttagtcgctcctggaatctgacatcattacaaaataata 9760709  T
Q  865 g--aaacataccctagagaga 883  Q
    |  ||||||||| ||||||||    
T  9760708 gaaaaacataccttagagaga 9760688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 768 - 862
Target Start/End: Original strand, 2629934 - 2630029
Alignment:
Q  768 tttattaatagaatccaacaaataagaa-aggttcatcgaggaaccctaatcgaagaggttttgttgctcatgg-aaccgacatcattacaaaacaa 862  Q
    |||||||||| | |||||||||||||||  ||||||||  |||||||||||| ||||||||| ||||||||||| |||  ||||||| |||||||||    
T  2629934 tttattaataaattccaacaaataagaaggggttcatcatggaaccctaatc-aagaggtttagttgctcatggcaacaaacatcataacaaaacaa 2630029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 769 - 828
Target Start/End: Complemental strand, 11082244 - 11082187
Alignment:
Q  769 ttattaatagaatccaacaaataagaaaggttcatcgaggaaccctaatcgaagaggttt 828  Q
    |||||||||||||||||||||||||   ||||||||| |||||||||||| |||||||||    
T  11082244 ttattaatagaatccaacaaataag--gggttcatcgtggaaccctaatcaaagaggttt 11082187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 503 - 613
Target Start/End: Complemental strand, 10924855 - 10924741
Alignment:
Q  503 gaaagtagaatataatcccgtgatgaatcagtggaagtttatt--aatccccca-caattaaaccatttacaattgt-gggttccattaagatgaattat 598  Q
    ||||||| || ||||  ||||||||||| ||||||||||||||  |||  |||  ||||| || ||||||||||||| ||||||| ||||||||| ||||    
T  10924855 gaaagtataacataactccgtgatgaattagtggaagtttattttaatatccctgcaattcaatcatttacaattgtggggttcccttaagatgagttat 10924756  T
Q  599 agccataaattcata 613  Q
    |||| ||||||||||    
T  10924755 agccctaaattcata 10924741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 767 - 840
Target Start/End: Original strand, 26839609 - 26839682
Alignment:
Q  767 ctttattaatagaatccaacaaataagaa-aggttcatcgaggaaccctaatcgaagaggttttgttgctcatgg 840  Q
    ||||||||||| |||||||||||||||||  ||||||||  |||||| ||||| ||||||||| |||||||||||    
T  26839609 ctttattaataaaatccaacaaataagaaggggttcatcttggaaccttaatc-aagaggtttagttgctcatgg 26839682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 587 - 644
Target Start/End: Complemental strand, 9760990 - 9760933
Alignment:
Q  587 aagatgaattatagccataaattcatagttaaattcaattatattagaaactaagcaa 644  Q
    ||||||| |||||||| |||||||||| | | ||||||||||||||||||| ||||||    
T  9760990 aagatgagttatagccctaaattcatactaagattcaattatattagaaaccaagcaa 9760933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 767 - 868
Target Start/End: Original strand, 9405267 - 9405369
Alignment:
Q  767 ctttattaatagaatccaacaaataagaa-aggttcatcgaggaaccctaatcgaagaggttttgttgctcatgg-aaccgacatcattacaaaacaatt 864  Q
    ||||| |||||  ||||||||||||||||  ||||||||  |||||||||||  ||||||||| ||||||||||| |||  ||||||| ||||||||||     
T  9405267 ctttaataataatatccaacaaataagaaggggttcatcatggaaccctaat-taagaggtttagttgctcatggcaacatacatcataacaaaacaata 9405365  T
Q  865 gaaa 868  Q
    ||||    
T  9405366 gaaa 9405369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 587 - 701
Target Start/End: Complemental strand, 9801431 - 9801314
Alignment:
Q  587 aagatgaattatagccataaattcatagttaaattcaattatattagaaactaagcaatt---tactgccttgtttgaatggaagggagggttgtcaatc 683  Q
    ||||||| ||||| || |||||||||| | | |||||||||||||| |||| ||||||||   || ||||||| |||| | || | ||||||||| ||||    
T  9801431 aagatgagttataaccctaaattcatactaagattcaattatattataaaccaagcaattcactattgccttggttgattagaggcgagggttgttaatc 9801332  T
Q  684 ttaatattgctccatcta 701  Q
     ||| ||||||| |||||    
T  9801331 ctaacattgctcaatcta 9801314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 420 - 498
Target Start/End: Original strand, 18494564 - 18494643
Alignment:
Q  420 aaattggtaagtgcaccaaatcgtacaaaataataaagtagtgagttaatcg-tctcctcagagattgtcgttcaactcg 498  Q
    ||||||| |||||||||||||||||  || |||||| ||||| |||| || | ||||| ||| |||||||||||||||||    
T  18494564 aaattggcaagtgcaccaaatcgtaacaagtaataaggtagtaagtttattgttctccacagggattgtcgttcaactcg 18494643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 767 - 868
Target Start/End: Original strand, 21536955 - 21537058
Alignment:
Q  767 ctttattaatagaatccaacaaataagaaag-gttcatcgaggaaccctaatcgaagaggttttgttgctcatgg-aaccgacatcattacaaaacaatt 864  Q
    ||||| |||| ||||||| |||||||||| | ||||||   |||||||||||| || | |||| ||||||||||| ||| || ||||||||||||||||     
T  21536955 ctttagtaatggaatccatcaaataagaaggagttcataatggaaccctaatcaaataagtttagttgctcatggcaactgatatcattacaaaacaata 21537054  T
Q  865 gaaa 868  Q
    ||||    
T  21537055 gaaa 21537058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 555 - 646
Target Start/End: Original strand, 22334498 - 22334589
Alignment:
Q  555 caattaaaccatttacaattgtgggttccattaagatgaattatagccataaattcatagttaaattcaattatattagaaactaagcaatt 646  Q
    ||||| ||||| ||||||||  ||||||| |||||||||  |||| || || ||||||| ||| |||||||||  || ||||||||||||||    
T  22334498 caattcaaccagttacaatttggggttcccttaagatgaggtataaccctacattcataattagattcaattaatttggaaactaagcaatt 22334589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 767 - 868
Target Start/End: Complemental strand, 15758131 - 15758029
Alignment:
Q  767 ctttattaatagaatccaacaaataagaaaggttcatcgaggaaccctaatcgaagaggttttgttgctcatggaa-ccgacatcattacaaaacaattg 865  Q
    ||||||||||  |||| || ||||||||| |||||||  ||||||| ||||| |||| | ||  ||| |||||||| ||||||||||||||||| ||| |    
T  15758131 ctttattaatcaaatctaaaaaataagaagggttcatgaaggaaccttaatcaaagaagattatttgttcatggaaaccgacatcattacaaaataatag 15758032  T
Q  866 aaa 868  Q
    |||    
T  15758031 aaa 15758029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 428 - 498
Target Start/End: Original strand, 21536418 - 21536488
Alignment:
Q  428 aagtgcaccaaatcgtacaaaataataaagtagtgagttaatcgtctcctcagagattgtcgttcaactcg 498  Q
    |||||||| ||||||||| ||||||||||||||  |||||||| ||||| | | |||| ||||| ||||||    
T  21536418 aagtgcactaaatcgtaccaaataataaagtaggaagttaatcttctccactgggattttcgttaaactcg 21536488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 767 - 868
Target Start/End: Complemental strand, 315833 - 315730
Alignment:
Q  767 ctttattaatagaatccaacaaataagaaagg--ttcatcgaggaaccctaatcgaagaggttttgttgctcatgg-aaccgacatcattacaaaacaat 863  Q
    ||||||||||| | ||||| |||||| || ||  ||||||| |||||||||||| ||||||||| ||||||||||| |||  ||||||| ||||| ||||    
T  315833 ctttattaataaattccaataaataaaaagggggttcatcgtggaaccctaatc-aagaggtttagttgctcatggcaacatacatcataacaaagcaat 315735  T
Q  864 tgaaa 868  Q
     ||||    
T  315734 agaaa 315730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 450 - 495
Target Start/End: Original strand, 6272135 - 6272180
Alignment:
Q  450 taataaagtagtgagttaatcgtctcctcagagattgtcgttcaac 495  Q
    ||||||||||||||||| ||||||| | |||||||| |||||||||    
T  6272135 taataaagtagtgagtttatcgtctacacagagattatcgttcaac 6272180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 5e-19; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 550 - 646
Target Start/End: Original strand, 18281399 - 18281496
Alignment:
Q  550 ccccacaattaaaccatttacaattgtgg-gttccattaagatgaattatagccataaattcatagttaaattcaattatattagaaactaagcaatt 646  Q
    |||||||||| ||||||||||||||| || ||||  ||||||||| ||||| || |||||||||| ||| ||||||||||||||||||||||| ||||    
T  18281399 ccccacaattcaaccatttacaattgcggagttctcttaagatgagttataaccctaaattcatacttagattcaattatattagaaactaagaaatt 18281496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 767 - 957
Target Start/End: Original strand, 18281618 - 18281817
Alignment:
Q  767 ctttattaatagaatccaacaaataagaa-aggttcatcgaggaaccctaatcgaagaggttttgttgctcatgg-aaccgacatcattacaaaacaatt 864  Q
    |||||||||||||||||||||||||||||  ||||| ||| ||||| |||||| ||||||||| ||| ||||||| ||||||||||||| || || |||     
T  18281618 ctttattaatagaatccaacaaataagaagtggttcgtcgtggaacgctaatcaaagaggtttagttactcatggcaaccgacatcattgcataaaaata 18281717  T
Q  865 g--aaacataccctagagaga--catagaaagatgga--tcctctgccttgaa-cttgtgatgattgacctttgccttgtaccgctagccttctgaatga 957  Q
    |  ||| ||||||||||||||   | || | ||||||  |||||| ||||||| ||  ||||| ||||| ||||||||| || |||||| ||||||||||    
T  18281718 gaaaaatataccctagagagaacaagaggacgatggaggtcctctaccttgaagctcctgatgtttgacgtttgccttgcactgctagctttctgaatga 18281817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 779 - 957
Target Start/End: Complemental strand, 20695325 - 20695139
Alignment:
Q  779 aatccaacaaataagaaagg-ttcatcgaggaaccctaatcgaagaggttttgttgctcatgg-aaccgacatcattacaaaacaattg--aaacatacc 874  Q
    ||||||||||||||||| || |||||||  ||||||||||| ||||| ||| ||||| ||||| | |  |||||||||||||||||| |  |||||||||    
T  20695325 aatccaacaaataagaaggggttcatcgtagaaccctaatcaaagagttttagttgcacatggcagcatacatcattacaaaacaatagaaaaacatacc 20695226  T
Q  875 ctagagagacataga--aagatg--gatcctctgccttgaacttgtgatgattgacctttgccttgtaccgctagccttctgaatga 957  Q
    ||||||||| | |||  | ||||  |||||  ||||||||| ||| |||| |||||| ||||||| |||| ||||| ||||||||||    
T  20695225 ctagagagaaaaagaagaggatgaagatccattgccttgaagttgcgatgcttgacccttgccttctaccactagctttctgaatga 20695139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 555 - 646
Target Start/End: Original strand, 22643134 - 22643226
Alignment:
Q  555 caattaaaccatttacaattgtggg-ttccattaagatgaattatagccataaattcatagttaaattcaattatattagaaactaagcaatt 646  Q
    ||||| ||||| ||||||||||||| || | ||||||||| ||||| || ||||| |||| ||||||||||||| |||| |||||||||||||    
T  22643134 caatttaaccaattacaattgtgggatttccttaagatgagttatatccctaaatccatacttaaattcaattaaattaaaaactaagcaatt 22643226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 767 - 840
Target Start/End: Complemental strand, 24268797 - 24268725
Alignment:
Q  767 ctttattaatagaatccaacaaataagaaaggttcatcgaggaaccctaatcgaagaggttttgttgctcatgg 840  Q
    ||||||||| ||||||||||||||||||| |||||||   |||| ||||||| ||||||||| |||||||||||    
T  24268797 ctttattaacagaatccaacaaataagaagggttcattttggaatcctaatc-aagaggtttagttgctcatgg 24268725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 767 - 840
Target Start/End: Complemental strand, 24345427 - 24345355
Alignment:
Q  767 ctttattaatagaatccaacaaataagaaaggttcatcgaggaaccctaatcgaagaggttttgttgctcatgg 840  Q
    ||||||||| ||||||||||||||||||| |||||||   |||| ||||||| ||||||||| |||||||||||    
T  24345427 ctttattaacagaatccaacaaataagaagggttcattttggaatcctaatc-aagaggtttagttgctcatgg 24345355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 768 - 833
Target Start/End: Original strand, 19763299 - 19763365
Alignment:
Q  768 tttattaatagaatccaacaaataagaaag-gttcatcgaggaaccctaatcgaagaggttttgttg 833  Q
    ||||||||| |||||||||||||||||| | ||||||| ||||||||||||  ||||||||| ||||    
T  19763299 tttattaattgaatccaacaaataagaaggagttcatcaaggaaccctaattaaagaggtttagttg 19763365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 768 - 859
Target Start/End: Complemental strand, 24131336 - 24131242
Alignment:
Q  768 tttattaatagaatccaacaaataagaa-aggttcatcgaggaaccctaatcga-agaggttttgttgctcatgg-aaccgacatcattacaaaa 859  Q
    ||||||||| ||||||||||||||| || |||||||||  ||||||| |||| | |||||||| ||| | ||||| |||||||||||||||||||    
T  24131336 tttattaattgaatccaacaaataataagaggttcatcttggaaccccaatcaagagaggtttagtttcacatggtaaccgacatcattacaaaa 24131242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 778 - 868
Target Start/End: Complemental strand, 17028962 - 17028870
Alignment:
Q  778 gaatccaacaaataagaa-aggttcatcgaggaaccctaatcgaagaggttttgttgctcatgg-aaccgacatcattacaaaacaattgaaa 868  Q
    |||||||||||||||||| |||||||||   ||||||| ||| ||||||||| ||||| ||||| |||  ||||||||||||| |||| ||||    
T  17028962 gaatccaacaaataagaagaggttcatcttagaaccctgatcaaagaggtttagttgcacatggtaacatacatcattacaaatcaatagaaa 17028870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 780 - 861
Target Start/End: Original strand, 7742306 - 7742388
Alignment:
Q  780 atccaacaaataagaaaggttcatcgaggaaccctaatcgaagaggttttgttgctcatg-gaaccgacatcattacaaaaca 861  Q
    |||||||||||||||| ||||||||  |||||||||||  |||| |||| ||||| ||||  ||| |||||||||| ||||||    
T  7742306 atccaacaaataagaagggttcatcttggaaccctaattaaagaagtttagttgcacatgacaacggacatcattagaaaaca 7742388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 778 - 883
Target Start/End: Complemental strand, 20084193 - 20084084
Alignment:
Q  778 gaatccaacaaataagaaagg-ttcatcgaggaaccctaatcgaagaggttttgttgctcatgg-aaccgacatcattacaaaaca--attgaaacatac 873  Q
    |||||||||||||||||| || ||||||  |||||||||||| ||||| ||| ||||| ||||| |||   ||||||||||||| |  ||  ||||||||    
T  20084193 gaatccaacaaataagaaggggttcatcatggaaccctaatcaaagagatttagttgcacatggtaacaaccatcattacaaaataatataaaaacatac 20084094  T
Q  874 cctagagaga 883  Q
    ||||||||||    
T  20084093 cctagagaga 20084084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 768 - 837
Target Start/End: Complemental strand, 20715286 - 20715217
Alignment:
Q  768 tttattaatagaatccaacaaataagaaag-gttcatcgaggaaccctaatcgaagaggttttgttgctca 837  Q
    ||||||||||  |||||||||||||||||| |||||||  | |||||||||| ||||||||| ||||||||    
T  20715286 tttattaataatatccaacaaataagaaagagttcatcttgaaaccctaatc-aagaggtttggttgctca 20715217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 768 - 840
Target Start/End: Original strand, 12339444 - 12339516
Alignment:
Q  768 tttattaatagaatccaacaaataagaaagg-ttcatcgaggaaccctaatcgaagaggttttgttgctcatgg 840  Q
    |||||||||| | ||||| ||||||||| || ||||||| |||||||||||| |||||| || |||||||||||    
T  12339444 tttattaataaattccaataaataagaaggggttcatcgtggaaccctaatc-aagaggattagttgctcatgg 12339516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 419 - 472
Target Start/End: Complemental strand, 19571104 - 19571051
Alignment:
Q  419 taaattggtaagtgcaccaaatcgtacaaaataataaagtagtgagttaatcgt 472  Q
    |||||| | |||||||||||||||||  ||||||||||||||| |||| |||||    
T  19571104 taaatttgcaagtgcaccaaatcgtaacaaataataaagtagtaagtttatcgt 19571051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 896 - 957
Target Start/End: Original strand, 19763435 - 19763496
Alignment:
Q  896 gatcctctgccttgaacttgtgatgattgacctttgccttgtaccgctagccttctgaatga 957  Q
    ||||||||||||||||  | ||||| |||||| |||||||||||| ||||| || |||||||    
T  19763435 gatcctctgccttgaagctttgatgtttgacccttgccttgtaccactagctttttgaatga 19763496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 3e-17; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 604 - 701
Target Start/End: Complemental strand, 28178862 - 28178762
Alignment:
Q  604 taaattcatagttaaattcaattatattagaaactaagcaatt---tactgccttgtttgaatggaagggagggttgtcaatcttaatattgctccatct 700  Q
    |||||||||| ||  |||||||||||||||||||||| |||||   ||||| |||||| ||||||| | |||||||||||||| |||||||||| |||||    
T  28178862 taaattcatatttggattcaattatattagaaactaaccaattcactactgtcttgttcgaatggaggcgagggttgtcaatcctaatattgcttcatct 28178763  T
Q  701 a 701  Q
    |    
T  28178762 a 28178762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 619 - 701
Target Start/End: Original strand, 1558094 - 1558179
Alignment:
Q  619 attcaattatattagaaactaagcaatttactgc---cttgtttgaatggaagggagggttgtcaatcttaatattgctccatcta 701  Q
    |||||||||||||| ||||||||||||| |||     |||||||||||||| | ||||||||| |||| |||||||||||||||||    
T  1558094 attcaattatattataaactaagcaattcactattatcttgtttgaatggaggcgagggttgttaatcctaatattgctccatcta 1558179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 767 - 868
Target Start/End: Original strand, 9396001 - 9396105
Alignment:
Q  767 ctttattaatagaatccaacaaataagaa-aggttcatcgaggaaccctaatcga-agaggttttgttgctcatgg-aaccgacatcattacaaaacaat 863  Q
    |||||||||| ||||||||||| |||||| | |||||||  |||||| ||||| | |||||||| ||| | ||||| |||||||||||||| ||||||||    
T  9396001 ctttattaatcgaatccaacaattaagaagatgttcatcttggaaccataatcaagagaggtttagtttcacatggcaaccgacatcattataaaacaat 9396100  T
Q  864 tgaaa 868  Q
    |||||    
T  9396101 tgaaa 9396105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 767 - 868
Target Start/End: Original strand, 9725592 - 9725694
Alignment:
Q  767 ctttattaatagaatccaacaaataagaaagg-ttcatcgaggaaccctaatcgaagaggttttgttgctcatg-gaaccgacatcattacaaaacaatt 864  Q
    |||| |||||| | ||||||||||||||| || ||||||| |||||||||||| |||||||||  |||||||||  ||| |||||||| ||||||||||     
T  9725592 cttttttaataaattccaacaaataagaaggggttcatcgtggaaccctaatc-aagaggtttaattgctcatgacaacagacatcataacaaaacaata 9725690  T
Q  865 gaaa 868  Q
    ||||    
T  9725691 gaaa 9725694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 428 - 495
Target Start/End: Complemental strand, 13804029 - 13803962
Alignment:
Q  428 aagtgcaccaaatcgtacaaaataataaagtagtgagttaatcgtctcctcagagattgtcgttcaac 495  Q
    |||||||||||||||||  || |||||||||||| ||||||||||||||  || |||||| |||||||    
T  13804029 aagtgcaccaaatcgtaacaattaataaagtagtaagttaatcgtctccatagggattgtagttcaac 13803962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 779 - 883
Target Start/End: Complemental strand, 15369405 - 15369300
Alignment:
Q  779 aatccaacaaataagaa-aggttcatcgaggaaccctaatcgaagaggttttgttgctcatggaaccgacatcattacaaaacaattg--aaacataccc 875  Q
    |||| |||||||||||| |||||||| | | |||||||||||||| ||||| ||||| ||||||| |  ||||  |||||||||||||  |||||||| |    
T  15369405 aatcaaacaaataagaagaggttcattgtgaaaccctaatcgaaggggtttagttgcgcatggaaac--catcgctacaaaacaattgaaaaacatactc 15369308  T
Q  876 tagagaga 883  Q
    ||||||||    
T  15369307 tagagaga 15369300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 420 - 496
Target Start/End: Complemental strand, 15576244 - 15576167
Alignment:
Q  420 aaattggtaagtgcaccaaatcgtacaaaataataaagtagtgagttaatcg-tctcctcagagattgtcgttcaact 496  Q
    ||||||| ||||||| |||||||||  || |||||||||||| |||| |||| ||||| ||| |||||||||||||||    
T  15576244 aaattggcaagtgcatcaaatcgtaacaagtaataaagtagtcagtttatcgttctccgcagggattgtcgttcaact 15576167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 422 - 498
Target Start/End: Complemental strand, 8037097 - 8037021
Alignment:
Q  422 attggtaagtgcaccaaatcgtacaaaataataaagtagtgagttaatcgtctcctcagagattgtcgttcaactcg 498  Q
    ||||| |||||||| ||||||||  || |||||||||||| |||| | ||||||| || |||||||| |||||||||    
T  8037097 attggcaagtgcactaaatcgtaacaagtaataaagtagtaagtttaccgtctccacatagattgtcattcaactcg 8037021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 428 - 476
Target Start/End: Complemental strand, 13782452 - 13782404
Alignment:
Q  428 aagtgcaccaaatcgtacaaaataataaagtagtgagttaatcgtctcc 476  Q
    |||||||||||||||||  || |||||||||||| ||||||||||||||    
T  13782452 aagtgcaccaaatcgtaacaattaataaagtagtaagttaatcgtctcc 13782404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 428 - 476
Target Start/End: Complemental strand, 13789774 - 13789726
Alignment:
Q  428 aagtgcaccaaatcgtacaaaataataaagtagtgagttaatcgtctcc 476  Q
    |||||||||||||||||  || |||||||||||| ||||||||||||||    
T  13789774 aagtgcaccaaatcgtaacaattaataaagtagtaagttaatcgtctcc 13789726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 767 - 868
Target Start/End: Complemental strand, 15319535 - 15319432
Alignment:
Q  767 ctttattaatagaatccaacaaataagaaagg-ttcatcgaggaaccctaatcgaagaggttttgttgctcatggaa-ccgacatcattacaaaacaatt 864  Q
    ||||||||||  |||||||||| |||||| || || |||  |||||||||||| || | ||||  |||  ||||||| ||||||||||||||||||||||    
T  15319535 ctttattaattaaatccaacaagtaagaaggggttaatcatggaaccctaatcaaacaagtttaattggacatggaaaccgacatcattacaaaacaatt 15319436  T
Q  865 gaaa 868  Q
    ||||    
T  15319435 gaaa 15319432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 767 - 868
Target Start/End: Original strand, 17859887 - 17859990
Alignment:
Q  767 ctttattaatagaatccaacaaataagaaag-gttcatcgaggaaccctaatcgaagaggttttgttgctcatgg-aaccgacatcattacaaaacaatt 864  Q
    |||||||||| |||||||||||||||||| | |||||||  ||||| |||||| ||||| ||| ||||| ||||| |||  | || |||||||||||||     
T  17859887 ctttattaattgaatccaacaaataagaaggtgttcatcttggaactctaatcaaagagttttagttgcacatggcaacaaatatgattacaaaacaata 17859986  T
Q  865 gaaa 868  Q
    ||||    
T  17859987 gaaa 17859990  T

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Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 767 - 868
Target Start/End: Original strand, 1558244 - 1558346
Alignment:
Q  767 ctttattaatagaatccaacaaataagaaaggttcatcgaggaaccctaatcgaagaggttttgttgctcatggaa-ccgacatcattacaaaacaattg 865  Q
    ||||||||||  |||| || ||||||||| |||||||  ||||||| ||||| |||| | ||  ||| |||||||| ||||||||||||||||| ||| |    
T  1558244 ctttattaatcaaatctaaaaaataagaagggttcatgaaggaaccttaatcaaagaagattatttgttcatggaaaccgacatcattacaaaataatag 1558343  T
Q  866 aaa 868  Q
    |||    
T  1558344 aaa 1558346  T

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Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 429 - 499
Target Start/End: Complemental strand, 22263653 - 22263583
Alignment:
Q  429 agtgcaccaaatcgtacaaaataataaagtagtgagttaatcgtctcctcagagattgtcgttcaactcgt 499  Q
    |||| |||||||||||  ||  ||||||||||| |||| || |||||| |||| |||||||||||||||||    
T  22263653 agtgtaccaaatcgtaataagcaataaagtagtaagtttattgtctccacagacattgtcgttcaactcgt 22263583  T

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Target: scaffold0337 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 767 - 868
Target Start/End: Complemental strand, 3854 - 3751
Alignment:
Q  767 ctttattaatagaatccaacaaataagaa-aggttcatcgaggaaccctaatcgaagaggttttgttgctcatgg-aaccgacatcattacaaaacaatt 864  Q
    |||| ||||| |||||||||||||||||| |||||||||  |||||| ||| | |||| |||| ||||||||||| ||||||||||||||||||| |||     
T  3854 ctttgttaatggaatccaacaaataagaagaggttcatcttggaaccataaacaaagaagtttggttgctcatggtaaccgacatcattacaaaataata 3755  T
Q  865 gaaa 868  Q
    ||||    
T  3754 gaaa 3751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107 (Bit Score: 36; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 419 - 498
Target Start/End: Complemental strand, 32913 - 32834
Alignment:
Q  419 taaattggtaagtgcaccaaatcgtacaaaataataaagtagtgagttaatcgtctcctcagagattgtcgttcaactcg 498  Q
    ||||| || ||||| |||||||||||| || |||||||||||| ||||||| |||||| ||  |||| ||||||||||||    
T  32913 taaataggcaagtgtaccaaatcgtaccaagtaataaagtagttagttaattgtctccacatggattatcgttcaactcg 32834  T

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Target: scaffold0855 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: scaffold0855
Description:

Target: scaffold0855; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 768 - 840
Target Start/End: Original strand, 2430 - 2502
Alignment:
Q  768 tttattaatagaatccaacaaataagaa-aggttcatcgaggaaccctaatcgaagaggttttgttgctcatgg 840  Q
    |||||||||| | |||||||||||||||  ||||||| | |||||||||||| ||||||||| |||||||||||    
T  2430 tttattaataaattccaacaaataagaaggggttcattgtggaaccctaatc-aagaggtttagttgctcatgg 2502  T

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Target: scaffold0847 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: scaffold0847
Description:

Target: scaffold0847; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 768 - 840
Target Start/End: Original strand, 2595 - 2667
Alignment:
Q  768 tttattaatagaatccaacaaataagaa-aggttcatcgaggaaccctaatcgaagaggttttgttgctcatgg 840  Q
    |||||||||| | |||||||||||||||  ||||||| | |||||||||||| ||||||||| |||||||||||    
T  2595 tttattaataaattccaacaaataagaaggggttcattgtggaaccctaatc-aagaggtttagttgctcatgg 2667  T

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Target: scaffold0065 (Bit Score: 33; Significance: 0.000000007; HSPs: 2)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 604 - 648
Target Start/End: Complemental strand, 13163 - 13119
Alignment:
Q  604 taaattcatagttaaattcaattatattagaaactaagcaattta 648  Q
    |||||||||| ||| ||||||||||||||||||||||| ||||||    
T  13163 taaattcatacttagattcaattatattagaaactaagaaattta 13119  T

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Target: scaffold0065; HSP #2
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 767 - 868
Target Start/End: Complemental strand, 12987 - 12884
Alignment:
Q  767 ctttattaatagaatccaacaaataagaa-aggttcatcgaggaaccctaatcgaagaggttttgttgctcatgg-aaccgacatcattacaaaacaatt 864  Q
    |||| ||||| ||||||||||||||||||  || |||| | |||||| ||| | || | |||| ||||||||||| ||||||||||||||||||| |||     
T  12987 ctttgttaatggaatccaacaaataagaagtggctcattgtggaaccataaacaaacaagtttggttgctcatggaaaccgacatcattacaaaataata 12888  T
Q  865 gaaa 868  Q
    ||||    
T  12887 gaaa 12884  T

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Target: scaffold0100 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 797 - 883
Target Start/End: Complemental strand, 37662 - 37573
Alignment:
Q  797 ggttcatcgaggaaccctaatcgaagaggttttgttgctcatgg-aaccgacatcattacaaaacaattg--aaacataccctagagaga 883  Q
    ||||||||  |||||||||||   |||  ||| ||||| ||||| ||||||| |||||||||||||||||  ||||||||||||||||||    
T  37662 ggttcatcatggaaccctaataagagaattttagttgcccatggcaaccgacgtcattacaaaacaattgaaaaacataccctagagaga 37573  T

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Target: scaffold0804 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0804
Description:

Target: scaffold0804; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 587 - 628
Target Start/End: Complemental strand, 736 - 695
Alignment:
Q  587 aagatgaattatagccataaattcatagttaaattcaattat 628  Q
    ||||||| ||||||||||||||||||| ||| ||||||||||    
T  736 aagatgagttatagccataaattcatacttagattcaattat 695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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