View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5237-Insertion-2 (Length: 441)
Name: NF5237-Insertion-2
Description: NF5237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5237-Insertion-2 |
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Alignment Details
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 7 - 249
Target Start/End: Complemental strand, 8262431 - 8262189
Alignment:
| Q |
7 |
actatatattactcaaattaacttatttatttgaagagcttaattttaaactcaaatttaacttatttaatcaaagaaccaggttgaacaaattaatcag |
106 |
Q |
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| T |
8262431 |
actatatattactcaaattaacttatttatttgaagagcttaattttaaactcaaatttaactcatttgatcaaagaaccaggttgaacaaattaatcac |
8262332 |
T |
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| Q |
107 |
caattcaaaactcaaattattttcaagtaggtttatttatttcccagccttatgaactttcaacactcctcatccatttttcaaccccttccctacccac |
206 |
Q |
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| T |
8262331 |
caattcaaaactcaaattattttcaagtaggtttatttatttatcagccttatgaactttcaacactcctcatccatttttcaaccccttccctacccac |
8262232 |
T |
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| Q |
207 |
tctataccgaagacactcctataatggactaataagcatggac |
249 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||| |
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| T |
8262231 |
tctataccgatgacactcctataatggactaataagcatggac |
8262189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 353 - 441
Target Start/End: Complemental strand, 8262113 - 8262024
Alignment:
| Q |
353 |
aaagaaactagttaattatttatctagtctgacctatataacataattaa-ttcataaattttagaccaagttcctctcactatttttct |
441 |
Q |
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|||||||||||||| |||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
8262113 |
aaagaaactagttatttatttgtctagtctgacctacataacataattaatttcataaattttagaccaagttcctctcactatttttct |
8262024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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