View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5237_high_1 (Length: 567)
Name: NF5237_high_1
Description: NF5237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5237_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 464; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 40 - 562
Target Start/End: Complemental strand, 37472592 - 37472072
Alignment:
| Q |
40 |
tgtaaaagactggtcccttctgctggaacaaattccattgatttattatggtttttactttgccttaaaatatcaatggaaattcgtactctcttatatg |
139 |
Q |
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| T |
37472592 |
tgtaaaagactggtcccttctgctggaacaaattccattgatttattatggtttttactttgccttaaaataccaatggaaattcgtactctcgtatatg |
37472493 |
T |
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| Q |
140 |
atgactacattgcatatacactcaggtgacaaaaacacgcaaataagagcttacgtgacgcccttgtaaaagaatgaaaacatagttagcttgtatccgt |
239 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37472492 |
atgactacattgcatatacactcaggtgacaaaaacacgcaagtaagagcttacgtgacgcccttgtaaaagaatgaaaacatagttagcttgtatccgt |
37472393 |
T |
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| Q |
240 |
ataagaacaactctgttgaaggttgttaattcagcatactaagaaacccagattcattcatcataggttaaagcgtcagaagatttccacttaaaataac |
339 |
Q |
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| T |
37472392 |
ataagaacaaccctgttgaaggttgttaattcagcatactaagaaacccagattcattcatcagaggttaaagcgtcagaagatttccacttaaaataac |
37472293 |
T |
|
| Q |
340 |
ctttacaacatccacacgacaaaacattatttgaaagttggaagttgtaggctatatactcatttttgtaggctatattttctggagattcaacataaaa |
439 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||| |
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| T |
37472292 |
cttcacaacatccacacgacaaaacattatttgaaagttggaagttgtaggctatatactca--tttataggaaatattttctggagattcaacataaaa |
37472195 |
T |
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| Q |
440 |
gacgtatcaagataatgaaaacacaaattgttcaatttgtaaatcaaacatagcttcaaacttgttatctccacttcaaaatacaccttatcgacctaaa |
539 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
37472194 |
gacgtatcaagataatgaaaacacaaattgttcaatttgtaaatcaatcatagcttcaaacttgttatctcctcttcaaaatacaccttatcgacctaaa |
37472095 |
T |
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| Q |
540 |
agttcccactagctttgtctctg |
562 |
Q |
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|||||||||||||||||| |||| |
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| T |
37472094 |
agttcccactagctttgtttctg |
37472072 |
T |
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