View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5237_low_2 (Length: 373)
Name: NF5237_low_2
Description: NF5237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5237_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 355
Target Start/End: Original strand, 28397478 - 28397836
Alignment:
| Q |
1 |
gaaattatgaatttttcgagagaatagatgctatgaattaattgatgtacttagaaa---------atgtgaatcatggagatgtgtatgaggagactag |
91 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
28397478 |
gaaattatgaatttttcgagagaatagatgctatgaattaattgatgtacttagaaaatgtggaaaatgtgaatcatggagatgtgtatgaggagactag |
28397577 |
T |
|
| Q |
92 |
gaaataataagagaatattgtgatagggggatagtttgcgtgtgaccatatggagatggagggagtttgttttcttgatttggctaattatattgatggg |
191 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |
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| T |
28397578 |
gaaataataagagaatattgtgatagggggatagtttgcgtgtgaccatatggagatagagggagtttgttttcaagatttggctaattatattgatggg |
28397677 |
T |
|
| Q |
192 |
agaatgtaatttcaatgtgtaacagactcaacttatgaattcatggaatcaatgaattagaatatattaattgatgttcataatgcactcatagttcaat |
291 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
28397678 |
agaatgtaatttcaatgtgtaacagagtcaacttatgaattcatggaatcaatgaattagaatat----attgatgttcataatgcactcatagttcaat |
28397773 |
T |
|
| Q |
292 |
gtatgtgagagaagaaatgcagggtatggcttcagcttgggctattgaaaatggggatatattt |
355 |
Q |
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| T |
28397774 |
gtgtgtgagagaagaaatgcagggtatggcttcagcttgggc-aatgaaaatggggatatattt |
28397836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 93 - 239
Target Start/End: Original strand, 37667798 - 37667947
Alignment:
| Q |
93 |
aaataataagagaatattgtgatagggg----gatagtttgcgtgtgaccatatggagatggagggagtttgttttcttgatttggctaattatattgat |
188 |
Q |
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|||||||| ||||| ||||||||| ||| ||| ||||||||| | |||||||| | |||||||||||||||||||||||||| ||||| ||||||| |
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| T |
37667798 |
aaataataggagaacattgtgataagggatatgatggtttgcgtgaggtcatatggata-ggagggagtttgttttcttgatttggataattgtattgat |
37667896 |
T |
|
| Q |
189 |
gggagaatgtaatttcaatgtgtaacagactcaacttatgaattcatggaa |
239 |
Q |
| |
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| ||| || |||| |||||||||| ||| |||| ||||||||| |||| |
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| T |
37667897 |
gtaagagagtgattttaatgtgtaactgaccaaactaatgaattcaaggaa |
37667947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 149 - 239
Target Start/End: Original strand, 43408466 - 43408556
Alignment:
| Q |
149 |
ggagggagtttgttttcttgatttggctaattatattgatgggagaatgtaatttcaatgtgtaacagactcaacttatgaattcatggaa |
239 |
Q |
| |
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|||||||||| ||||||||||||||| ||||| |||||||| ||| || |||| |||||||||| ||| |||| ||||||||| |||| |
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| T |
43408466 |
ggagggagttggttttcttgatttggataattgtattgatgtaagagagtgattttaatgtgtaactgaccaaactaatgaattcaaggaa |
43408556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 89 - 214
Target Start/End: Complemental strand, 337663 - 337539
Alignment:
| Q |
89 |
taggaaataataagagaatattgtgatagggggatagtttgcgtgtgaccatatggagatggagggagtttgttttcttgatttggctaattatattgat |
188 |
Q |
| |
|
|||||| ||||||||||||| ||||| |||| ||| ||||||| ||| | | ||||| ||| |||||||| |||| | ||||||||||||||||| | |
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| T |
337663 |
taggaagtaataagagaatactgtgagaggga-ataatttgcgtatgatcctttggagggggatggagtttgccttctaggtttggctaattatattggt |
337565 |
T |
|
| Q |
189 |
gggagaatgtaatttcaatgtgtaac |
214 |
Q |
| |
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|| |||| | ||||||||||||||| |
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| T |
337564 |
ggaagaaactgatttcaatgtgtaac |
337539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 149 - 239
Target Start/End: Complemental strand, 40458446 - 40458356
Alignment:
| Q |
149 |
ggagggagtttgttttcttgatttggctaattatattgatgggagaatgtaatttcaatgtgtaacagactcaacttatgaattcatggaa |
239 |
Q |
| |
|
|||||||||| ||||||||||||||| ||||| |||||||| ||| || |||| |||||||||| ||| |||| ||||||||| |||| |
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| T |
40458446 |
ggagggagttggttttcttgatttggataattgtattgatgtaagagagtgattttaatgtgtaactgaccaaactaatgaattcaaggaa |
40458356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 214
Target Start/End: Complemental strand, 68902 - 68778
Alignment:
| Q |
89 |
taggaaataataagagaatattgtgatagggggatagtttgcgtgtgaccatatggagatggagggagtttgttttcttgatttggctaattatattgat |
188 |
Q |
| |
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|||||| |||||||||||||||| || |||| | | ||||||| || ||| ||||| ||| |||||||| |||| | ||||||||||||||||| | |
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| T |
68902 |
taggaagtaataagagaatattgcgagaggga-acaatttgcgtatggtcatttggagggggatggagtttgccttctaggtttggctaattatattggt |
68804 |
T |
|
| Q |
189 |
gggagaatgtaatttcaatgtgtaac |
214 |
Q |
| |
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|| |||| | ||||||||||||||| |
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| T |
68803 |
ggaagaaactgatttcaatgtgtaac |
68778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 89 - 214
Target Start/End: Complemental strand, 22077258 - 22077134
Alignment:
| Q |
89 |
taggaaataataagagaatattgtgatagggggatagtttgcgtgtgaccatatggagatggagggagtttgttttcttgatttggctaattatattgat |
188 |
Q |
| |
|
|||||| ||||||||||||||||||| |||| | | ||||||| || ||| ||||| ||| |||||||| |||| | ||||||||||||||||| | |
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| T |
22077258 |
taggaagtaataagagaatattgtgagaggga-acaatttgcgtatggtcatttggagggggatggagtttgccttctaggtttggctaattatattggt |
22077160 |
T |
|
| Q |
189 |
gggagaatgtaatttcaatgtgtaac |
214 |
Q |
| |
|
|| |||| | ||||||||||||||| |
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|
| T |
22077159 |
ggaagaaactgatttcaatgtgtaac |
22077134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 214
Target Start/End: Complemental strand, 40447036 - 40446912
Alignment:
| Q |
89 |
taggaaataataagagaatattgtgatagggggatagtttgcgtgtgaccatatggagatggagggagtttgttttcttgatttggctaattatattgat |
188 |
Q |
| |
|
|||||| ||||||||||||| ||||| |||| | | ||||||| ||| | | ||||| ||| |||||||| |||| | ||||||||||||||||| | |
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| T |
40447036 |
taggaagtaataagagaatactgtgagaggga-acaatttgcgtatgatcctttggagggggatggagtttgccttctaggtttggctaattatattggt |
40446938 |
T |
|
| Q |
189 |
gggagaatgtaatttcaatgtgtaac |
214 |
Q |
| |
|
|| |||| | ||||||||||||||| |
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|
| T |
40446937 |
ggaagaaactgatttcaatgtgtaac |
40446912 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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