View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5238-Insertion-10 (Length: 343)
Name: NF5238-Insertion-10
Description: NF5238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5238-Insertion-10 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 114; Significance: 9e-58; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 206 - 343
Target Start/End: Original strand, 38053046 - 38053183
Alignment:
| Q |
206 |
ctttattctatgttaaactttgcattaattagacatgttaggaatgttatttataatatggaaaatgattgatattacgaatactaatcaaacgacctaa |
305 |
Q |
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| T |
38053046 |
ctttattctatgttaaactttgcattaattagacatgttaggaatgttacttataatatggaaaatgattgatattacgaatactaatcaaacgatctaa |
38053145 |
T |
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| Q |
306 |
cgaattaatttggtttgttgaattatatttccgtccac |
343 |
Q |
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| T |
38053146 |
caaattaatttgattcgttgaattatatttccgaccac |
38053183 |
T |
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Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 7 - 105
Target Start/End: Original strand, 38052572 - 38052670
Alignment:
| Q |
7 |
atatacaaaaagcattcaatctcttcaatccggtacctcaannnnnnnnaccactaaacgaatatataagttcaccacgcttcagaagttgaaagccaa |
105 |
Q |
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| T |
38052572 |
atatacaaaaaatattcaatctcttcaatccggtacctcaattttttttaccactaaacgaatatataagttcaccacgcttgagaagttgaaagccaa |
38052670 |
T |
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