View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5238-Insertion-11 (Length: 269)

Name: NF5238-Insertion-11
Description: NF5238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5238-Insertion-11
NF5238-Insertion-11
[»] chr6 (13 HSPs)
chr6 (111-256)||(27312249-27312394)
chr6 (111-256)||(32274433-32274578)
chr6 (114-256)||(8504835-8504977)
chr6 (119-256)||(5003889-5004026)
chr6 (111-256)||(29452675-29452821)
chr6 (112-256)||(31171123-31171267)
chr6 (110-214)||(12174698-12174802)
chr6 (173-256)||(2543142-2543225)
chr6 (112-227)||(18741947-18742062)
chr6 (111-256)||(7156370-7156503)
chr6 (112-160)||(29302500-29302548)
chr6 (111-145)||(27312113-27312147)
chr6 (112-145)||(8504733-8504766)
[»] chr7 (33 HSPs)
chr7 (112-256)||(17904163-17904307)
chr7 (111-256)||(29427297-29427442)
chr7 (112-256)||(26770179-26770323)
chr7 (112-256)||(37179465-37179608)
chr7 (112-256)||(46467468-46467612)
chr7 (112-256)||(6387825-6387969)
chr7 (112-256)||(6389732-6389876)
chr7 (120-256)||(9876271-9876407)
chr7 (110-256)||(4405107-4405253)
chr7 (112-256)||(29890959-29891103)
chr7 (110-256)||(41921987-41922133)
chr7 (116-235)||(31503091-31503210)
chr7 (111-221)||(19523863-19523975)
chr7 (115-211)||(9332364-9332460)
chr7 (127-254)||(33974506-33974636)
chr7 (112-256)||(12252069-12252216)
chr7 (132-256)||(9215595-9215722)
chr7 (111-227)||(43701550-43701666)
chr7 (127-256)||(46689878-46690011)
chr7 (110-256)||(31858225-31858373)
chr7 (112-227)||(33379130-33379244)
chr7 (111-257)||(33915716-33915863)
chr7 (112-180)||(29722955-29723023)
chr7 (127-182)||(49011065-49011120)
chr7 (170-256)||(48049057-48049146)
chr7 (138-256)||(5514803-5514923)
chr7 (111-145)||(4405353-4405387)
chr7 (111-145)||(29890825-29890859)
chr7 (110-144)||(46467333-46467367)
chr7 (112-145)||(17904407-17904440)
chr7 (202-256)||(22753201-22753257)
chr7 (112-145)||(29723381-29723414)
chr7 (112-145)||(37179331-37179364)
[»] chr5 (21 HSPs)
chr5 (112-256)||(29874954-29875098)
chr5 (112-256)||(12399079-12399223)
chr5 (112-256)||(34208538-34208682)
chr5 (112-256)||(23090298-23090442)
chr5 (112-256)||(4145694-4145838)
chr5 (112-256)||(4695295-4695439)
chr5 (111-251)||(3077596-3077736)
chr5 (138-246)||(42757953-42758061)
chr5 (177-256)||(22646042-22646121)
chr5 (127-227)||(12096365-12096466)
chr5 (112-181)||(41610625-41610694)
chr5 (112-181)||(42793040-42793109)
chr5 (115-179)||(4434783-4434847)
chr5 (108-145)||(29875198-29875235)
chr5 (140-256)||(22528030-22528149)
chr5 (109-145)||(42793562-42793598)
chr5 (110-181)||(8718023-8718094)
chr5 (110-144)||(23090543-23090577)
chr5 (112-145)||(12398946-12398979)
chr5 (111-144)||(41610372-41610405)
chr5 (112-145)||(42757805-42757838)
[»] chr3 (30 HSPs)
chr3 (110-256)||(29371671-29371817)
chr3 (111-255)||(1352130-1352274)
chr3 (112-256)||(18996967-18997111)
chr3 (112-256)||(18999506-18999650)
chr3 (112-256)||(32677610-32677754)
chr3 (112-256)||(39528749-39528893)
chr3 (112-256)||(41349504-41349648)
chr3 (112-256)||(28228436-28228580)
chr3 (112-256)||(39807112-39807256)
chr3 (110-256)||(55365906-55366052)
chr3 (115-256)||(21974152-21974293)
chr3 (115-256)||(21996583-21996724)
chr3 (111-256)||(36737967-36738112)
chr3 (118-256)||(38855323-38855461)
chr3 (115-256)||(22157261-22157402)
chr3 (119-247)||(29014832-29014960)
chr3 (127-256)||(39518422-39518551)
chr3 (112-256)||(32839949-32840092)
chr3 (127-256)||(49040977-49041107)
chr3 (112-181)||(49319347-49319416)
chr3 (109-145)||(41349368-41349404)
chr3 (110-145)||(39518651-39518686)
chr3 (111-145)||(29014689-29014723)
chr3 (111-145)||(36737833-36737867)
chr3 (111-145)||(38855561-38855595)
chr3 (112-145)||(1351996-1352029)
chr3 (112-145)||(18997211-18997244)
chr3 (112-145)||(18999750-18999783)
chr3 (112-145)||(39528993-39529026)
chr3 (112-144)||(46878980-46879012)
[»] chr8 (22 HSPs)
chr8 (111-256)||(33837862-33838007)
chr8 (112-256)||(2508929-2509073)
chr8 (112-256)||(28378947-28379091)
chr8 (112-256)||(45334409-45334553)
chr8 (110-256)||(25106209-25106355)
chr8 (111-256)||(9739984-9740129)
chr8 (117-242)||(13469652-13469777)
chr8 (112-256)||(38495605-38495749)
chr8 (111-235)||(27793345-27793469)
chr8 (156-256)||(2626371-2626472)
chr8 (109-256)||(32183614-32183762)
chr8 (111-181)||(27024432-27024502)
chr8 (111-179)||(25978969-25979037)
chr8 (111-180)||(8235161-8235230)
chr8 (147-227)||(3203413-3203492)
chr8 (108-145)||(27027655-27027692)
chr8 (140-174)||(2626667-2626701)
chr8 (112-145)||(25106455-25106488)
chr8 (112-145)||(28379191-28379224)
chr8 (112-145)||(33837729-33837762)
chr8 (112-145)||(45334276-45334309)
chr8 (112-144)||(9740231-9740263)
[»] chr1 (25 HSPs)
chr1 (111-256)||(47669118-47669263)
chr1 (112-255)||(46220259-46220402)
chr1 (110-250)||(4817267-4817407)
chr1 (112-256)||(10737834-10737978)
chr1 (112-256)||(9831503-9831647)
chr1 (112-256)||(18126851-18126994)
chr1 (112-256)||(3384728-3384870)
chr1 (111-248)||(4055483-4055620)
chr1 (111-256)||(48564817-48564961)
chr1 (138-251)||(8889468-8889581)
chr1 (113-256)||(7414208-7414351)
chr1 (112-214)||(1236205-1236307)
chr1 (138-256)||(39241178-39241296)
chr1 (111-191)||(1749521-1749601)
chr1 (138-227)||(26842465-26842552)
chr1 (112-181)||(33020206-33020275)
chr1 (166-240)||(37875846-37875920)
chr1 (111-227)||(33846820-33846936)
chr1 (111-227)||(33947042-33947158)
chr1 (111-145)||(10737700-10737734)
chr1 (111-145)||(46220503-46220537)
chr1 (112-145)||(47669363-47669396)
chr1 (146-227)||(49112439-49112520)
chr1 (113-145)||(1236071-1236103)
chr1 (111-143)||(48565063-48565095)
[»] chr2 (17 HSPs)
chr2 (109-256)||(43040982-43041129)
chr2 (114-256)||(15233757-15233899)
chr2 (111-256)||(35793040-35793184)
chr2 (111-256)||(41252414-41252559)
chr2 (110-250)||(31296081-31296221)
chr2 (112-255)||(44104683-44104833)
chr2 (112-256)||(41642891-41643038)
chr2 (127-256)||(31903513-31903641)
chr2 (8-67)||(28860056-28860115)
chr2 (51-100)||(28860139-28860188)
chr2 (127-249)||(21727684-21727809)
chr2 (112-181)||(10118660-10118729)
chr2 (111-181)||(36963130-36963200)
chr2 (109-145)||(10112336-10112372)
chr2 (112-145)||(15233999-15234032)
chr2 (112-145)||(43040849-43040882)
chr2 (112-144)||(44104546-44104578)
[»] chr4 (17 HSPs)
chr4 (109-256)||(45590739-45590886)
chr4 (109-256)||(8955909-8956056)
chr4 (122-256)||(34334342-34334476)
chr4 (111-256)||(33288538-33288683)
chr4 (118-256)||(49162108-49162245)
chr4 (112-256)||(18835705-18835851)
chr4 (111-204)||(30469353-30469446)
chr4 (127-256)||(50774191-50774325)
chr4 (115-211)||(39481906-39482002)
chr4 (178-256)||(36971115-36971192)
chr4 (109-227)||(26025685-26025803)
chr4 (111-181)||(19256185-19256255)
chr4 (111-162)||(36016278-36016329)
chr4 (127-256)||(33109031-33109163)
chr4 (127-181)||(36968353-36968407)
chr4 (112-146)||(19257103-19257137)
chr4 (108-145)||(49162332-49162369)
[»] scaffold0103 (1 HSPs)
scaffold0103 (109-256)||(44616-44764)


Alignment Details
Target: chr6 (Bit Score: 142; Significance: 1e-74; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 111 - 256
Target Start/End: Complemental strand, 27312394 - 27312249
Alignment:
Q  111 atactccctccattccttttcttttggtgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctcaagtttac 210  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27312394 atactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctcaagtttac 27312295  T
Q  211 ccttgttggaaaacacaataaactattaaagtagttgtgacctttg 256  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  27312294 ccttgttggaaaacacaataaactattaaagtagttgtgacctttg 27312249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 111 - 256
Target Start/End: Original strand, 32274433 - 32274578
Alignment:
Q  111 atactccctccattccttttcttttggtgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctcaagtttac 210  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||    
T  32274433 atactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttgttattgttttctcaagtttac 32274532  T
Q  211 ccttgttggaaaacacaataaactattaaagtagttgtgacctttg 256  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  32274533 ccttgttggaaaacacaataaactattaaagtagttgtgacctttg 32274578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 114 - 256
Target Start/End: Complemental strand, 8504977 - 8504835
Alignment:
Q  114 ctccctccattccttttcttttggtgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctcaagtttaccct 213  Q
    |||||||||||| |||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |||||||| |||||||||    
T  8504977 ctccctccattcattttcttttgatgttttagaacttcaactatatttcaaaacttttgatgttttagtgaatttattattattttctcaggtttaccct 8504878  T
Q  214 tgttggaaaacacaataaactattaaagtagttgtgacctttg 256  Q
    ||||| |||||||||||||||||||||||||||||||||||||    
T  8504877 tgttgaaaaacacaataaactattaaagtagttgtgacctttg 8504835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 119 - 256
Target Start/End: Original strand, 5003889 - 5004026
Alignment:
Q  119 tccattccttttcttttggtgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctcaagtttacccttgttg 218  Q
    ||||||| |||| ||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5003889 tccattcatttttttttgatgttttagaacttcaactatatttcaaaacttttgatgttttagtgaatttattattgttttctcaagtttacccttgttg 5003988  T
Q  219 gaaaacacaataaactattaaagtagttgtgacctttg 256  Q
    |||||||||||||||||||||||||||| |||| ||||    
T  5003989 gaaaacacaataaactattaaagtagttttgacatttg 5004026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 111 - 256
Target Start/End: Complemental strand, 29452821 - 29452675
Alignment:
Q  111 atactccctccattccttttcttttggtgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttatta-ttgttttctcaagttta 209  Q
    |||||||||||||| |||||||| || |||||||||||||||||||||||| |||    ||||||||||||||||||||||| |||||||||||||||||    
T  29452821 atactccctccatttcttttcttctgatgttttagaacttcaactatattctaaatttcttgatgttttagtgaatttattacttgttttctcaagttta 29452722  T
Q  210 cccttgttggaaaacacaataaactattaaagtagttgtgacctttg 256  Q
    | ||||||||||||||| ||||||||||||| |||||||||||||||    
T  29452721 cacttgttggaaaacaccataaactattaaaatagttgtgacctttg 29452675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 112 - 256
Target Start/End: Complemental strand, 31171267 - 31171123
Alignment:
Q  112 tactccctccattccttttcttttggtgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctcaagtttacc 211  Q
    ||||||||||||| ||||||||||| || ||||||| ||||| | |||||||||||||| |||||| ||||||||||||||||||||||||||||||| |    
T  31171267 tactccctccatttcttttcttttgatgatttagaaattcaaatgtattccaaaacattagatgttgtagtgaatttattattgttttctcaagtttatc 31171168  T
Q  212 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 256  Q
     || |||||||||||  |||||||||||| |||||||||||||||    
T  31171167 tttattggaaaacaccttaaactattaaaatagttgtgacctttg 31171123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 110 - 214
Target Start/End: Original strand, 12174698 - 12174802
Alignment:
Q  110 tatactccctccattccttttcttttggtgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctcaagttta 209  Q
    ||||||||||||||||||||||||||  ||||||||||||| || ||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  12174698 tatactccctccattccttttcttttaatgttttagaactttaaatatattccaaaacttttgatgttttagtgaatttattattgttttctcaagttta 12174797  T
Q  210 ccctt 214  Q
    |||||    
T  12174798 ccctt 12174802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 173 - 256
Target Start/End: Original strand, 2543142 - 2543225
Alignment:
Q  173 atgttttagtgaatttattattgttttctcaagtttacccttgttggaaaacacaataaactattaaagtagttgtgacctttg 256  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  2543142 atgttttagtgaatttattattgttttctcaagtttacccttgttgaaaaacacaataaactattaaagtagttgtgacatttg 2543225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 112 - 227
Target Start/End: Original strand, 18741947 - 18742062
Alignment:
Q  112 tactccctccattccttttcttttggtgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctcaagtttacc 211  Q
    ||||||||||||| ||||||||||| |||||||| ||||||||| |||| |||||||||||||||||||||  ||||| |||||| ||||||| ||||||    
T  18741947 tactccctccatttcttttcttttgatgttttaggacttcaactttatttcaaaacatttgatgttttagtatatttaatattgtattctcaaatttacc 18742046  T
Q  212 cttgttggaaaacaca 227  Q
    ||||||| ||||||||    
T  18742047 cttgttgaaaaacaca 18742062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 111 - 256
Target Start/End: Complemental strand, 7156503 - 7156370
Alignment:
Q  111 atactccctccattccttttcttttggtgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctcaagtttac 210  Q
    |||||||||||||| ||||||||||| |||||||||   |||||||||||||||||| || ||||||||||||||||||||||||||||               
T  7156503 atactccctccatttcttttcttttgatgttttagacaatcaactatattccaaaactttagatgttttagtgaatttattattgtttt----------- 7156415  T
Q  211 ccttgttggaaaacacaataaactattaaagtagttgtgacctttg 256  Q
     ||||||||||||||| |||||||||||||||| ||||||| ||||    
T  7156414 -cttgttggaaaacaccataaactattaaagtaattgtgacatttg 7156370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 112 - 160
Target Start/End: Complemental strand, 29302548 - 29302500
Alignment:
Q  112 tactccctccattccttttcttttggtgttttagaacttcaactatatt 160  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  29302548 tactccctccattccttttcttttgatgttttagaacttcaactatatt 29302500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 145
Target Start/End: Original strand, 27312113 - 27312147
Alignment:
Q  111 atactccctccattccttttcttttggtgttttag 145  Q
    |||||||||||||||||||||||||| ||||||||    
T  27312113 atactccctccattccttttcttttgatgttttag 27312147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 112 - 145
Target Start/End: Original strand, 8504733 - 8504766
Alignment:
Q  112 tactccctccattccttttcttttggtgttttag 145  Q
    ||||||||||||||||||||||||| ||||||||    
T  8504733 tactccctccattccttttcttttgatgttttag 8504766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 137; Significance: 1e-71; HSPs: 33)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 112 - 256
Target Start/End: Original strand, 17904163 - 17904307
Alignment:
Q  112 tactccctccattccttttcttttggtgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctcaagtttacc 211  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  17904163 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaagtttacc 17904262  T
Q  212 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 256  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  17904263 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 17904307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 111 - 256
Target Start/End: Complemental strand, 29427442 - 29427297
Alignment:
Q  111 atactccctccattccttttcttttggtgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctcaagtttac 210  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  29427442 atactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaagtttac 29427343  T
Q  211 ccttgttggaaaacacaataaactattaaagtagttgtgacctttg 256  Q
    |||||||||||||||||||||||||||||||||||||||| |||||    
T  29427342 ccttgttggaaaacacaataaactattaaagtagttgtgatctttg 29427297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 112 - 256
Target Start/End: Original strand, 26770179 - 26770323
Alignment:
Q  112 tactccctccattccttttcttttggtgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctcaagtttacc 211  Q
    ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  26770179 tactccctccattccttttcttttgatgttttagaacttcaactaaattccaaaacttttgatgttttagtgaatttattattgttttctcaagtttacc 26770278  T
Q  212 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 256  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  26770279 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 26770323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 112 - 256
Target Start/End: Complemental strand, 37179608 - 37179465
Alignment:
Q  112 tactccctccattccttttcttttggtgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctcaagtttacc 211  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||    
T  37179608 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttct-aagtttacc 37179510  T
Q  212 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 256  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  37179509 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 37179465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 112 - 256
Target Start/End: Complemental strand, 46467612 - 46467468
Alignment:
Q  112 tactccctccattccttttcttttggtgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctcaagtttacc 211  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  46467612 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaagtttacc 46467513  T
Q  212 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 256  Q
     ||||||||||||||||||||||||||||||||||| ||||||||    
T  46467512 tttgttggaaaacacaataaactattaaagtagttgcgacctttg 46467468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 112 - 256
Target Start/End: Complemental strand, 6387969 - 6387825
Alignment:
Q  112 tactccctccattccttttcttttggtgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctcaagtttacc 211  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||| |||||||||||    
T  6387969 tactccctccattccttttcttttgatgttttagaactgcaactatattccaaaacttttgatgttttagtgaatttgttattgttttatcaagtttacc 6387870  T
Q  212 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 256  Q
    |||||||||||||||||||||||||||||||||||||||| ||||    
T  6387869 cttgttggaaaacacaataaactattaaagtagttgtgacatttg 6387825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 112 - 256
Target Start/End: Original strand, 6389732 - 6389876
Alignment:
Q  112 tactccctccattccttttcttttggtgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctcaagtttacc 211  Q
    |||||||||||||| |||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||     
T  6389732 tactccctccattcattttgttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaagtttact 6389831  T
Q  212 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 256  Q
    |||||||||||||||||||||||||||||||||||||||| ||||    
T  6389832 cttgttggaaaacacaataaactattaaagtagttgtgacatttg 6389876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 120 - 256
Target Start/End: Original strand, 9876271 - 9876407
Alignment:
Q  120 ccattccttttcttttggtgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctcaagtttacccttgttgg 219  Q
    ||||||||||||||||| ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  9876271 ccattccttttcttttgatgttttaaaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaattttacccttgttgg 9876370  T
Q  220 aaaacacaataaactattaaagtagttgtgacctttg 256  Q
    ||||||| |||||||||||||||||||||||||||||    
T  9876371 aaaacaccataaactattaaagtagttgtgacctttg 9876407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 110 - 256
Target Start/End: Original strand, 4405107 - 4405253
Alignment:
Q  110 tatactccctccattccttttcttttggtgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctcaagttta 209  Q
    ||||||||||||||| ||||||||||| ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||    
T  4405107 tatactccctccatttcttttcttttgatgttttaaaacttcaactatattctaaaacatttgatgttttagtgaatttattattgttttctcaatttta 4405206  T
Q  210 cccttgttggaaaacacaataaactattaaagtagttgtgacctttg 256  Q
     |||||||||||||||| ||||| |||||||||||||||||||||||    
T  4405207 tccttgttggaaaacaccataaattattaaagtagttgtgacctttg 4405253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 112 - 256
Target Start/End: Complemental strand, 29891103 - 29890959
Alignment:
Q  112 tactccctccattccttttcttttggtgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctcaagtttacc 211  Q
    ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||  |||||||||||||||||||||| |||||||||||||||||| |    
T  29891103 tactccctccattccttttcttttgatgttttaaaacttcaactatattccaaaatttttgatgttttagtgaatttatgattgttttctcaagtttatc 29891004  T
Q  212 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 256  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||    
T  29891003 cttgatggaaaacacaataaactattaaagtagttgtgacttttg 29890959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 110 - 256
Target Start/End: Complemental strand, 41922133 - 41921987
Alignment:
Q  110 tatactccctccattccttttcttttggtgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctcaagttta 209  Q
    ||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |||||||||    
T  41922133 tatactccctctatttcttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttaatattgttttatcaagttta 41922034  T
Q  210 cccttgttggaaaacacaataaactattaaagtagttgtgacctttg 256  Q
    ||||||||| ||||||||||||||||||||||||||||  |||||||    
T  41922033 cccttgttgaaaaacacaataaactattaaagtagttgcaacctttg 41921987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 116 - 235
Target Start/End: Complemental strand, 31503210 - 31503091
Alignment:
Q  116 ccctccattccttttcttttggtgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctcaagtttacccttg 215  Q
    |||||| |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||    
T  31503210 ccctccgttccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttcttaagtttacccttg 31503111  T
Q  216 ttggaaaacacaataaacta 235  Q
    ||||||||||| ||||||||    
T  31503110 ttggaaaacactataaacta 31503091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 111 - 221
Target Start/End: Complemental strand, 19523975 - 19523863
Alignment:
Q  111 atactccctccattccttttcttt--tggtgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctcaagttt 208  Q
    |||||||||| ||||||||| |||  || |||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||||    
T  19523975 atactccctctattccttttttttgttgatgttttagaacttcaactatattccaaaatttttgatgttttagtgaatttattattgttttatcaagttt 19523876  T
Q  209 acccttgttggaa 221  Q
    |||||||||||||    
T  19523875 acccttgttggaa 19523863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 115 - 211
Target Start/End: Original strand, 9332364 - 9332460
Alignment:
Q  115 tccctccattccttttcttttggtgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctcaagtttacc 211  Q
    ||||||||||  |||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |||||||    
T  9332364 tccctccattttttttcttttgatgttttagaacttcaactatatttcaaaacttttgatgttttagtgaatttattattgttttctcaggtttacc 9332460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 127 - 254
Target Start/End: Original strand, 33974506 - 33974636
Alignment:
Q  127 ttttcttttggtgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctcaagtttacccttgttggaaaacac 226  Q
    |||||||||| |||||| |||||||||||||||||||||| |||| ||||||||||  ||||| |||| ||||| ||||||||||||||||| |||||||    
T  33974506 ttttcttttgatgttttcgaacttcaactatattccaaaatattttatgttttagtatatttaatatttttttcccaagtttacccttgttgaaaaacac 33974605  T
Q  227 a--at-aaactattaaagtagttgtgacctt 254  Q
    |  || |||||||||||| ||||||||||||    
T  33974606 accataaaactattaaaggagttgtgacctt 33974636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 112 - 256
Target Start/End: Original strand, 12252069 - 12252216
Alignment:
Q  112 tactccctccattccttttcttttggtgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctcaagtttacc 211  Q
    |||||||||||||  |||||||||| ||||||||||||||||||||||||||||| |||||||||| || |  ||||| | |||||||| |||||||||     
T  12252069 tactccctccattttttttcttttgatgttttagaacttcaactatattccaaaatatttgatgttctaatatatttaatcttgttttcccaagtttact 12252168  T
Q  212 cttgttggaaaacaca--at-aaactattaaagtagttgtgacctttg 256  Q
    || |||| ||||||||  || |||||||||||| |||| |||| ||||    
T  12252169 ctagttgaaaaacacaccataaaactattaaaggagttatgacttttg 12252216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 132 - 256
Target Start/End: Complemental strand, 9215722 - 9215595
Alignment:
Q  132 ttttggtgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctcaagtttacccttgttggaaa--acacaat 229  Q
    ||||| ||||||||||||||||||||||||||||| |||| ||||||||||  || || |||| |||| |||| ||||||||||||| |||  |||| ||    
T  9215722 ttttgatgttttagaacttcaactatattccaaaatatttaatgttttagtatatgtaatatttttttttcaaatttacccttgttgaaaaagacaccat 9215623  T
Q  230 -aaactattaaagtagttgtgacctttg 256  Q
     ||| |||||||| ||||||||||||||    
T  9215622 aaaattattaaaggagttgtgacctttg 9215595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 111 - 227
Target Start/End: Original strand, 43701550 - 43701666
Alignment:
Q  111 atactccctccattccttttcttttggtgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctcaagtttac 210  Q
    |||||||||||||||||||||||||| ||||||||||||| ||||  ||||||||| ||||||||||||||    |||| |||| |||   ||| |||||    
T  43701550 atactccctccattccttttcttttgatgttttagaacttaaacttcattccaaaaaatttgatgttttagaatttttaatattttttatccaattttac 43701649  T
Q  211 ccttgttggaaaacaca 227  Q
    |||||||| ||||||||    
T  43701650 ccttgttgaaaaacaca 43701666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 127 - 256
Target Start/End: Original strand, 46689878 - 46690011
Alignment:
Q  127 ttttcttttggtgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctcaagtttacccttgttggaaa---a 223  Q
    |||||||||| ||||||||||||||||||||||||||||| | |||||||||||||    ||| |||| ||||| ||||||||||||| ||| |||   |    
T  46689878 ttttcttttgatgttttagaacttcaactatattccaaaatacttgatgttttagtatggttaatatttttttcccaagtttaccctttttgaaaaaaca 46689977  T
Q  224 cacaat-aaactattaaagtagttgtgacctttg 256  Q
    ||| || |||||||||||| ||||||||| ||||    
T  46689978 cacgataaaactattaaagaagttgtgacatttg 46690011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 110 - 256
Target Start/End: Complemental strand, 31858373 - 31858225
Alignment:
Q  110 tatactccctccattccttttcttttggtgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctcaagttta 209  Q
    |||||||||||||||  |||||||||| ||||||| |||||||||||||||  |||| |||||||||||||||  ||||| | || ||||| ||| ||||    
T  31858373 tatactccctccattttttttcttttgatgttttacaacttcaactatattttaaaatatttgatgttttagtatatttaat-tttttttcccaaattta 31858275  T
Q  210 cccttgttggaaaacaca--at-aaactattaaagtagttgtgacctttg 256  Q
    |||| |||| ||||||||  || ||| |||||||  ||||||||||||||    
T  31858274 ccctcgttgaaaaacacatcataaaagtattaaatgagttgtgacctttg 31858225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 112 - 227
Target Start/End: Complemental strand, 33379244 - 33379130
Alignment:
Q  112 tactccctccattccttttcttttggtgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctcaagtttacc 211  Q
    ||||||||||||| ||||||||||| ||||||||||||||||||  ||| ||||| ||||||||||||||    |||| |||| || || ||| ||||||    
T  33379244 tactccctccatttcttttcttttgatgttttagaacttcaacttgatttcaaaatatttgatgttttaggatttttaatatttttatc-caattttacc 33379146  T
Q  212 cttgttggaaaacaca 227  Q
    ||||||| ||||||||    
T  33379145 cttgttgaaaaacaca 33379130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 111 - 257
Target Start/End: Original strand, 33915716 - 33915863
Alignment:
Q  111 atactccctccattccttttcttttggtgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctcaagtttac 210  Q
    ||||||||||||||  |||||||||| |||||| ||| || ||||||||| ||||| |||||||||||||||  ||||| | || ||||| ||||||||     
T  33915716 atactccctccattt-ttttcttttgttgtttttgaattttaactatatttcaaaatatttgatgttttagtatatttaatttttttttcccaagttta- 33915813  T
Q  211 ccttgttggaaaacaca--at-aaactattaaagtagttgtgacctttgc 257  Q
    |||||||| ||||||||  || |||||||||||   ||||||||||||||    
T  33915814 ccttgttgaaaaacacaccataaaactattaaataggttgtgacctttgc 33915863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 112 - 180
Target Start/End: Original strand, 29722955 - 29723023
Alignment:
Q  112 tactccctccattccttttcttttggtgttttagaacttcaactatattccaaaacatttgatgtttta 180  Q
    ||||| ||||||||||||||||||| | ||||||||||| |||| ||||||||||| ||||||||||||    
T  29722955 tactctctccattccttttcttttgatattttagaacttaaactttattccaaaacttttgatgtttta 29723023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 127 - 182
Target Start/End: Complemental strand, 49011120 - 49011065
Alignment:
Q  127 ttttcttttggtgttttagaacttcaactatattccaaaacatttgatgttttagt 182  Q
    |||||||||| |||||||| |||||||||||||| |||||||||||||||||||||    
T  49011120 ttttcttttgatgttttaggacttcaactatatttcaaaacatttgatgttttagt 49011065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 170 - 256
Target Start/End: Original strand, 48049057 - 48049146
Alignment:
Q  170 ttgatgttttagtgaatttattattgttttctcaagtttacccttgttggaaaacacaat---aaactattaaagtagttgtgacctttg 256  Q
    |||||||||||||  ||||| |||| ||||| ||||||||||| ||||| |||||||| |   |||||||||||| ||||||||||||||    
T  48049057 ttgatgttttagtatatttaatatttttttcccaagtttacccctgttgaaaaacacactagaaaactattaaaggagttgtgacctttg 48049146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 256
Target Start/End: Original strand, 5514803 - 5514923
Alignment:
Q  138 tgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctcaagtttacccttgttggaaaacacaat---aaact 234  Q
    ||||||||||||| || ||||||| |||| |||||||  ||||||  ||||| |||| | || |||||||||||||||||  |||||||| |   |||||    
T  5514803 tgttttagaactttaaatatattctaaaatatttgattatttagtatatttaatatt-tattttcaagtttacccttgttaaaaaacacactataaaact 5514901  T
Q  235 attaaagtagttgtgacctttg 256  Q
    ||||||  ||||||||||||||    
T  5514902 attaaaagagttgtgacctttg 5514923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 145
Target Start/End: Complemental strand, 4405387 - 4405353
Alignment:
Q  111 atactccctccattccttttcttttggtgttttag 145  Q
    |||||||||||||||||||||||||| ||||||||    
T  4405387 atactccctccattccttttcttttgatgttttag 4405353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 145
Target Start/End: Original strand, 29890825 - 29890859
Alignment:
Q  111 atactccctccattccttttcttttggtgttttag 145  Q
    |||||||||||||||||||||||||| ||||||||    
T  29890825 atactccctccattccttttcttttgatgttttag 29890859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 144
Target Start/End: Original strand, 46467333 - 46467367
Alignment:
Q  110 tatactccctccattccttttcttttggtgtttta 144  Q
    ||||||||||||||||||||||||||| |||||||    
T  46467333 tatactccctccattccttttcttttgatgtttta 46467367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 112 - 145
Target Start/End: Complemental strand, 17904440 - 17904407
Alignment:
Q  112 tactccctccattccttttcttttggtgttttag 145  Q
    ||||||||||||||||||||||||| ||||||||    
T  17904440 tactccctccattccttttcttttgatgttttag 17904407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 202 - 256
Target Start/End: Complemental strand, 22753257 - 22753201
Alignment:
Q  202 caagtttacccttgttggaaaacaca--ataaactattaaagtagttgtgacctttg 256  Q
    ||||||||| |||||||||||||| |  |||||||||||||  ||||||||||||||    
T  22753257 caagtttacgcttgttggaaaacaaactataaactattaaaaaagttgtgacctttg 22753201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 112 - 145
Target Start/End: Complemental strand, 29723414 - 29723381
Alignment:
Q  112 tactccctccattccttttcttttggtgttttag 145  Q
    ||||||||||||||||||||||||| ||||||||    
T  29723414 tactccctccattccttttcttttgatgttttag 29723381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 112 - 145
Target Start/End: Original strand, 37179331 - 37179364
Alignment:
Q  112 tactccctccattccttttcttttggtgttttag 145  Q
    ||||||||||||||||||||||||| ||||||||    
T  37179331 tactccctccattccttttcttttgatgttttag 37179364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 137; Significance: 1e-71; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 112 - 256
Target Start/End: Original strand, 29874954 - 29875098
Alignment:
Q  112 tactccctccattccttttcttttggtgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctcaagtttacc 211  Q
    |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29874954 tactccctccattctttttcttttgatgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctcaagtttacc 29875053  T
Q  212 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 256  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  29875054 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 29875098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 112 - 256
Target Start/End: Complemental strand, 12399223 - 12399079
Alignment:
Q  112 tactccctccattccttttcttttggtgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctcaagtttacc 211  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||    
T  12399223 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttgttattgttttctcaagtttacc 12399124  T
Q  212 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 256  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  12399123 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 12399079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 112 - 256
Target Start/End: Original strand, 34208538 - 34208682
Alignment:
Q  112 tactccctccattccttttcttttggtgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctcaagtttacc 211  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||    
T  34208538 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttgttattgttttctcaagtttacc 34208637  T
Q  212 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 256  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  34208638 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 34208682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 112 - 256
Target Start/End: Original strand, 23090298 - 23090442
Alignment:
Q  112 tactccctccattccttttcttttggtgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctcaagtttacc 211  Q
    ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||  |||||||||||||||||||| ||||||||||||||||||||||    
T  23090298 tactccctccattccttttcttttgatgttttagaacttcaactgtattccaaaatttttgatgttttagtgaatttgttattgttttctcaagtttacc 23090397  T
Q  212 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 256  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  23090398 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 23090442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 112 - 256
Target Start/End: Original strand, 4145694 - 4145838
Alignment:
Q  112 tactccctccattccttttcttttggtgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctcaagtttacc 211  Q
    ||||| ||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||||||||||| |||||||||||| |||||||||    
T  4145694 tactcgctccattccttttcttttgatgttttagaactttaactatattccaaaacttttgatgttttagtgaatttgttattgttttcttaagtttacc 4145793  T
Q  212 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 256  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  4145794 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 4145838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 112 - 256
Target Start/End: Complemental strand, 4695439 - 4695295
Alignment:
Q  112 tactccctccattccttttcttttggtgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctcaagtttacc 211  Q
    |||||||| |||||||||||||||| | ||||||||||||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||||||    
T  4695439 tactcccttcattccttttcttttgattttttagaacttcaactatatttcaaaacttttgatgttttagtgaatttgttattgttttctcaagtttacc 4695340  T
Q  212 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 256  Q
    |||||||||||||||||||||||||||||||||||||||| ||||    
T  4695339 cttgttggaaaacacaataaactattaaagtagttgtgacatttg 4695295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 111 - 251
Target Start/End: Original strand, 3077596 - 3077736
Alignment:
Q  111 atactccctccattccttttcttttggtgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctcaagtttac 210  Q
    ||||||||||||||| |||||||||| |||||||||| ||||||||||||  ||||| |||||||||||||||||||| ||||||||||||||||||||     
T  3077596 atactccctccattcattttcttttgatgttttagaatttcaactatattttaaaacttttgatgttttagtgaatttgttattgttttctcaagtttat 3077695  T
Q  211 ccttgttggaaaacacaataaactattaaagtagttgtgac 251  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  3077696 ccttgttggaaaacacaataaactattaaagtagttgtgac 3077736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 138 - 246
Target Start/End: Complemental strand, 42758061 - 42757953
Alignment:
Q  138 tgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctcaagtttacccttgttggaaaacacaataaactatt 237  Q
    |||||||||||||||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||    
T  42758061 tgttttagaacttcaactatttttcaaaacttttgatgttttagtgaatttattattgttttctcaagtttatccttgttggaaaacacgataaactatt 42757962  T
Q  238 aaagtagtt 246  Q
    |||||||||    
T  42757961 aaagtagtt 42757953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 177 - 256
Target Start/End: Complemental strand, 22646121 - 22646042
Alignment:
Q  177 tttagtgaatttattattgttttctcaagtttacccttgttggaaaacacaataaactattaaagtagttgtgacctttg 256  Q
    ||||||||||||||||||||||||||||||||| |||||||| ||||||| |||||||||||||||||||||||| ||||    
T  22646121 tttagtgaatttattattgttttctcaagtttaaccttgttgaaaaacaccataaactattaaagtagttgtgacttttg 22646042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 127 - 227
Target Start/End: Complemental strand, 12096466 - 12096365
Alignment:
Q  127 ttttcttttggtgttttagaacttcaactatattccaaaacatttgatgttttagt-gaatttattattgttttctcaagtttacccttgttggaaaaca 225  Q
    |||||||||| |||||||| |||||||||||||||||||||||||||||||||| |  | |||| |||| ||||||||||| ||| ||||||| ||||||    
T  12096466 ttttcttttgatgttttaggacttcaactatattccaaaacatttgatgttttaatatattttaatattcttttctcaagtgtactcttgttgaaaaaca 12096367  T
Q  226 ca 227  Q
    ||    
T  12096366 ca 12096365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 112 - 181
Target Start/End: Complemental strand, 41610694 - 41610625
Alignment:
Q  112 tactccctccattccttttcttttggtgttttagaacttcaactatattccaaaacatttgatgttttag 181  Q
    ||||| ||||||| ||||||||||| ||||||||||||| |||| ||||||||||| |||||||||||||    
T  41610694 tactctctccatttcttttcttttgatgttttagaacttaaactttattccaaaacttttgatgttttag 41610625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 112 - 181
Target Start/End: Original strand, 42793040 - 42793109
Alignment:
Q  112 tactccctccattccttttcttttggtgttttagaacttcaactatattccaaaacatttgatgttttag 181  Q
    ||||| ||||||||||||||||||| ||||||||| ||| |||| ||||||||||| |||||||||||||    
T  42793040 tactcactccattccttttcttttgatgttttagagcttaaactttattccaaaacttttgatgttttag 42793109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 115 - 179
Target Start/End: Original strand, 4434783 - 4434847
Alignment:
Q  115 tccctccattccttttcttttggtgttttagaacttcaactatattccaaaacatttgatgtttt 179  Q
    |||||||||| ||||||||||| |||||||| ||||||||| |||| ||| | ||||||||||||    
T  4434783 tccctccatttcttttcttttgatgttttaggacttcaactttatttcaagatatttgatgtttt 4434847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 108 - 145
Target Start/End: Complemental strand, 29875235 - 29875198
Alignment:
Q  108 aatatactccctccattccttttcttttggtgttttag 145  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  29875235 aatatactccctccattccttttcttttgatgttttag 29875198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 256
Target Start/End: Original strand, 22528030 - 22528149
Alignment:
Q  140 ttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctcaagtttacccttgttggaaaacaca--at-aaactat 236  Q
    |||||| ||||||| |||| ||||||| |||||||||||||||  ||||| || | || |  ||| |||||| |||||| ||||||||  || |||||||    
T  22528030 ttttaggacttcaattatactccaaaatatttgatgttttagtacatttaataattttattccaaatttacctttgttgaaaaacacaccataaaactat 22528129  T
Q  237 taaagtagttgtgacctttg 256  Q
    ||||  ||||||||||||||    
T  22528130 taaaagagttgtgacctttg 22528149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 145
Target Start/End: Complemental strand, 42793598 - 42793562
Alignment:
Q  109 atatactccctccattccttttcttttggtgttttag 145  Q
    |||||||||||||||||||||||||||| ||||||||    
T  42793598 atatactccctccattccttttcttttgatgttttag 42793562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 110 - 181
Target Start/End: Original strand, 8718023 - 8718094
Alignment:
Q  110 tatactccctccattccttttcttttggtgttttagaacttcaactatattccaaaacatttgatgttttag 181  Q
    |||| |||||||||| ||||||||||| | |||||  | ||||||| |||| ||||| ||||||||||||||    
T  8718023 tataatccctccatttcttttcttttgatattttaagatttcaactttatttcaaaatatttgatgttttag 8718094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 144
Target Start/End: Complemental strand, 23090577 - 23090543
Alignment:
Q  110 tatactccctccattccttttcttttggtgtttta 144  Q
    ||||||||||||||||||||||||||| |||||||    
T  23090577 tatactccctccattccttttcttttgatgtttta 23090543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 112 - 145
Target Start/End: Original strand, 12398946 - 12398979
Alignment:
Q  112 tactccctccattccttttcttttggtgttttag 145  Q
    ||||||||||||||||||||||||| ||||||||    
T  12398946 tactccctccattccttttcttttgatgttttag 12398979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 111 - 144
Target Start/End: Original strand, 41610372 - 41610405
Alignment:
Q  111 atactccctccattccttttcttttggtgtttta 144  Q
    |||||||||||||||||||||||||| |||||||    
T  41610372 atactccctccattccttttcttttgatgtttta 41610405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 112 - 145
Target Start/End: Original strand, 42757805 - 42757838
Alignment:
Q  112 tactccctccattccttttcttttggtgttttag 145  Q
    ||||||||||||||||||||||||| ||||||||    
T  42757805 tactccctccattccttttcttttgatgttttag 42757838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 135; Significance: 2e-70; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 110 - 256
Target Start/End: Complemental strand, 29371817 - 29371671
Alignment:
Q  110 tatactccctccattccttttcttttggtgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctcaagttta 209  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  29371817 tatactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaagttta 29371718  T
Q  210 cccttgttggaaaacacaataaactattaaagtagttgtgacctttg 256  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||    
T  29371717 cccttgttggaaaacacaataaactattaaagtacttgtgacctttg 29371671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 111 - 255
Target Start/End: Complemental strand, 1352274 - 1352130
Alignment:
Q  111 atactccctccattccttttcttttggtgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctcaagtttac 210  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||    
T  1352274 atactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttgttattgttttctcaagtttac 1352175  T
Q  211 ccttgttggaaaacacaataaactattaaagtagttgtgaccttt 255  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  1352174 ccttgttggaaaacacaataaactattaaagtagttgtgaccttt 1352130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 112 - 256
Target Start/End: Original strand, 18996967 - 18997111
Alignment:
Q  112 tactccctccattccttttcttttggtgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctcaagtttacc 211  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  18996967 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaagtttacc 18997066  T
Q  212 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 256  Q
    |||||||||||||||||||||||||||||||||||||||| ||||    
T  18997067 cttgttggaaaacacaataaactattaaagtagttgtgacttttg 18997111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 112 - 256
Target Start/End: Original strand, 18999506 - 18999650
Alignment:
Q  112 tactccctccattccttttcttttggtgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctcaagtttacc 211  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  18999506 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaagtttacc 18999605  T
Q  212 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 256  Q
    |||||||||||||||||||||||||||||||||||||||| ||||    
T  18999606 cttgttggaaaacacaataaactattaaagtagttgtgacttttg 18999650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 112 - 256
Target Start/End: Complemental strand, 32677754 - 32677610
Alignment:
Q  112 tactccctccattccttttcttttggtgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctcaagtttacc 211  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  32677754 tactccctccattccttttcttttgatgttttagaacttcaactatataccaaaacttttgatgttttagtgaatttattattgttttctcaagtttacc 32677655  T
Q  212 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 256  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  32677654 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 32677610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 112 - 256
Target Start/End: Original strand, 39528749 - 39528893
Alignment:
Q  112 tactccctccattccttttcttttggtgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctcaagtttacc 211  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||    
T  39528749 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttgttattgttttctcaagtttacc 39528848  T
Q  212 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 256  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  39528849 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 39528893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 112 - 256
Target Start/End: Complemental strand, 41349648 - 41349504
Alignment:
Q  112 tactccctccattccttttcttttggtgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctcaagtttacc 211  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||    
T  41349648 tactccctccattccttttcttttgatgttttagaacttcaactatattctaaaacttttgatgttttagtgaatttgttattgttttctcaagtttacc 41349549  T
Q  212 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 256  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  41349548 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 41349504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 112 - 256
Target Start/End: Original strand, 28228436 - 28228580
Alignment:
Q  112 tactccctccattccttttcttttggtgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctcaagtttacc 211  Q
    ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  28228436 tactctctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaagtttacc 28228535  T
Q  212 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 256  Q
    |||||||||||| |||||||||||||||||||| |||||| ||||    
T  28228536 cttgttggaaaatacaataaactattaaagtagctgtgacatttg 28228580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 112 - 256
Target Start/End: Complemental strand, 39807256 - 39807112
Alignment:
Q  112 tactccctccattccttttcttttggtgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctcaagtttacc 211  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||||||    
T  39807256 tacttcctccattccttttcttttgatgttttagaacttcaactatattacaaaacttttgatgttttagtgaatttgttattgttttctcaagtttacc 39807157  T
Q  212 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 256  Q
    || ||||||||||||||||||||||||||||||||||||||||||    
T  39807156 ctcgttggaaaacacaataaactattaaagtagttgtgacctttg 39807112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 110 - 256
Target Start/End: Original strand, 55365906 - 55366052
Alignment:
Q  110 tatactccctccattccttttcttttggtgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctcaagttta 209  Q
    |||||||||| |||||||||||||||| ||||||||||||||||||||||| ||||   |||||||||||||||||||||||||||||||||||||||||    
T  55365906 tatactcccttcattccttttcttttgatgttttagaacttcaactatatttcaaattttttgatgttttagtgaatttattattgttttctcaagttta 55366005  T
Q  210 cccttgttggaaaacacaataaactattaaagtagttgtgacctttg 256  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||    
T  55366006 cccttgttagaaaacacaataaactattaaagtagttgtgacctttg 55366052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 115 - 256
Target Start/End: Original strand, 21974152 - 21974293
Alignment:
Q  115 tccctccattccttttcttttggtgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctcaagtttaccctt 214  Q
    |||||||||| ||||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||    
T  21974152 tccctccatttcttttcttttgatgttttagaatttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaggtttaccttt 21974251  T
Q  215 gttggaaaacacaataaactattaaagtagttgtgacctttg 256  Q
    |||||||||||| ||||| |||||||||||||||||||||||    
T  21974252 gttggaaaacaccataaaatattaaagtagttgtgacctttg 21974293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 115 - 256
Target Start/End: Original strand, 21996583 - 21996724
Alignment:
Q  115 tccctccattccttttcttttggtgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctcaagtttaccctt 214  Q
    |||||||||| ||||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||    
T  21996583 tccctccatttcttttcttttgatgttttagaatttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaggtttaccttt 21996682  T
Q  215 gttggaaaacacaataaactattaaagtagttgtgacctttg 256  Q
    |||||||||||| ||||| |||||||||||||||||||||||    
T  21996683 gttggaaaacaccataaaatattaaagtagttgtgacctttg 21996724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 111 - 256
Target Start/End: Complemental strand, 36738112 - 36737967
Alignment:
Q  111 atactccctccattccttttcttttggtgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctcaagtttac 210  Q
    ||||||| | |||||||||||||||| ||||||||||||| |||||||||  ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  36738112 atactccattcattccttttcttttgatgttttagaactttaactatattttaaaacttttgatgttttagtgaatttattattgttttctcaagtttac 36738013  T
Q  211 ccttgttggaaaacacaataaactattaaagtagttgtgacctttg 256  Q
     |||||||||||||||||||||||||||||||||||||||| ||||    
T  36738012 tcttgttggaaaacacaataaactattaaagtagttgtgacatttg 36737967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 118 - 256
Target Start/End: Original strand, 38855323 - 38855461
Alignment:
Q  118 ctccattccttttcttttggtgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctcaagtttacccttgtt 217  Q
    ||||||||||||||||||| ||||||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |||||||    
T  38855323 ctccattccttttcttttgatgttttaaaacatcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaattttatccttgtt 38855422  T
Q  218 ggaaaacacaataaactattaaagtagttgtgacctttg 256  Q
    | ||||||| |||||||||||||||||||||||||||||    
T  38855423 gaaaaacaccataaactattaaagtagttgtgacctttg 38855461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 115 - 256
Target Start/End: Original strand, 22157261 - 22157402
Alignment:
Q  115 tccctccattccttttcttttggtgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctcaagtttaccctt 214  Q
    |||||||||| ||||||||||| |||||||||||||||||||||||| ||||| |||||| |||||||||||||||||||||||||||| ||||||| ||    
T  22157261 tccctccatttcttttcttttgatgttttagaacttcaactatattctaaaacttttgatattttagtgaatttattattgttttctcaggtttaccttt 22157360  T
Q  215 gttggaaaacacaataaactattaaagtagttgtgacctttg 256  Q
    |||||||||||| ||||| |||||||||||||||||||||||    
T  22157361 gttggaaaacaccataaaatattaaagtagttgtgacctttg 22157402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 119 - 247
Target Start/End: Complemental strand, 29014960 - 29014832
Alignment:
Q  119 tccattccttttcttttggtgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctcaagtttacccttgttg 218  Q
    ||||||| |||| ||||  |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29014960 tccattctttttttttttatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaagtttacccttgttg 29014861  T
Q  219 gaaaacacaataaactattaaagtagttg 247  Q
    ||||||||| |||||||||||||||||||    
T  29014860 gaaaacacattaaactattaaagtagttg 29014832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 127 - 256
Target Start/End: Original strand, 39518422 - 39518551
Alignment:
Q  127 ttttcttttggtgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctcaagtttacccttgttggaaaacac 226  Q
    |||| ||||| ||||||| ||||||||||||||| |||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  39518422 tttttttttgatgttttaaaacttcaactatatttcaaaacttttgatattttagtgaatttattattgttttctcaagtttatccttgttggaaaacac 39518521  T
Q  227 aataaactattaaagtagttgtgacctttg 256  Q
    |||||||||||||||||||| |||| ||||    
T  39518522 aataaactattaaagtagttatgacatttg 39518551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 112 - 256
Target Start/End: Original strand, 32839949 - 32840092
Alignment:
Q  112 tactccctccattccttttcttttggtgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctcaagtttacc 211  Q
    |||||||||||||| |||||||||  | |||||||||||||||||||||  |||   ||||||||||||||||||| |||||| |||||| ||||||  |    
T  32839949 tactccctccattcattttctttttatattttagaacttcaactatattttaaattttttgatgttttagtgaatt-attattattttcttaagtttgtc 32840047  T
Q  212 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 256  Q
    |||||| |||||||||||||||||||||| |||||||||| ||||    
T  32840048 cttgttagaaaacacaataaactattaaaatagttgtgacatttg 32840092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 127 - 256
Target Start/End: Complemental strand, 49041107 - 49040977
Alignment:
Q  127 ttttcttttggtgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctcaagtttacccttgttggaaaaca- 225  Q
    |||||||||| |||||||||||||||||||| |||||||| |||||||||||||||  ||||| |||  ||||| || |||||||||||||| ||||||     
T  49041107 ttttcttttgatgttttagaacttcaactatgttccaaaatatttgatgttttagtatatttaatat--ttttcccacgtttacccttgttgaaaaacaa 49041010  T
Q  226 --caataaactattaaagtagttgtgacctttg 256  Q
      ||  |||||||||||| ||||| ||||||||    
T  49041009 accataaaactattaaaggagttgggacctttg 49040977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 112 - 181
Target Start/End: Original strand, 49319347 - 49319416
Alignment:
Q  112 tactccctccattccttttcttttggtgttttagaacttcaactatattccaaaacatttgatgttttag 181  Q
    |||| |||||||||||||||||||| ||||||||||||| ||||  |||| ||||  |||||||||||||    
T  49319347 tacttcctccattccttttcttttgatgttttagaacttaaacttcattctaaaaattttgatgttttag 49319416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 145
Target Start/End: Original strand, 41349368 - 41349404
Alignment:
Q  109 atatactccctccattccttttcttttggtgttttag 145  Q
    |||||||||||||||||||||||||||| ||||||||    
T  41349368 atatactccctccattccttttcttttgatgttttag 41349404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 110 - 145
Target Start/End: Complemental strand, 39518686 - 39518651
Alignment:
Q  110 tatactccctccattccttttcttttggtgttttag 145  Q
    ||||||||||||||||||||||||||| ||||||||    
T  39518686 tatactccctccattccttttcttttgatgttttag 39518651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 145
Target Start/End: Original strand, 29014689 - 29014723
Alignment:
Q  111 atactccctccattccttttcttttggtgttttag 145  Q
    |||||||||||||||||||||||||| ||||||||    
T  29014689 atactccctccattccttttcttttgatgttttag 29014723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 145
Target Start/End: Original strand, 36737833 - 36737867
Alignment:
Q  111 atactccctccattccttttcttttggtgttttag 145  Q
    |||||||||||||||||||||||||| ||||||||    
T  36737833 atactccctccattccttttcttttgatgttttag 36737867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 145
Target Start/End: Complemental strand, 38855595 - 38855561
Alignment:
Q  111 atactccctccattccttttcttttggtgttttag 145  Q
    |||||||||||||||||||||||||| ||||||||    
T  38855595 atactccctccattccttttcttttgatgttttag 38855561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 112 - 145
Target Start/End: Original strand, 1351996 - 1352029
Alignment:
Q  112 tactccctccattccttttcttttggtgttttag 145  Q
    ||||||||||||||||||||||||| ||||||||    
T  1351996 tactccctccattccttttcttttgatgttttag 1352029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 112 - 145
Target Start/End: Complemental strand, 18997244 - 18997211
Alignment:
Q  112 tactccctccattccttttcttttggtgttttag 145  Q
    ||||||||||||||||||||||||| ||||||||    
T  18997244 tactccctccattccttttcttttgatgttttag 18997211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 112 - 145
Target Start/End: Complemental strand, 18999783 - 18999750
Alignment:
Q  112 tactccctccattccttttcttttggtgttttag 145  Q
    ||||||||||||||||||||||||| ||||||||    
T  18999783 tactccctccattccttttcttttgatgttttag 18999750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 112 - 145
Target Start/End: Complemental strand, 39529026 - 39528993
Alignment:
Q  112 tactccctccattccttttcttttggtgttttag 145  Q
    ||||||||||||||||||||||||| ||||||||    
T  39529026 tactccctccattccttttcttttgatgttttag 39528993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 112 - 144
Target Start/End: Complemental strand, 46879012 - 46878980
Alignment:
Q  112 tactccctccattccttttcttttggtgtttta 144  Q
    ||||||||||||||||||||||||| |||||||    
T  46879012 tactccctccattccttttcttttgatgtttta 46878980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 134; Significance: 8e-70; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 111 - 256
Target Start/End: Complemental strand, 33838007 - 33837862
Alignment:
Q  111 atactccctccattccttttcttttggtgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctcaagtttac 210  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||    
T  33838007 atactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttgttattgttttctcaagtttac 33837908  T
Q  211 ccttgttggaaaacacaataaactattaaagtagttgtgacctttg 256  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  33837907 ccttgttggaaaacacaataaactattaaagtagttgtgacctttg 33837862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 112 - 256
Target Start/End: Complemental strand, 2509073 - 2508929
Alignment:
Q  112 tactccctccattccttttcttttggtgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctcaagtttacc 211  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||    
T  2509073 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttgttattgttttctcaagtttacc 2508974  T
Q  212 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 256  Q
    |||||||||||||||| ||||||||||||||||||||||||||||    
T  2508973 cttgttggaaaacacagtaaactattaaagtagttgtgacctttg 2508929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 112 - 256
Target Start/End: Original strand, 28378947 - 28379091
Alignment:
Q  112 tactccctccattccttttcttttggtgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctcaagtttacc 211  Q
    |||||||||||||  |||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  28378947 tactccctccattatttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaagtttacc 28379046  T
Q  212 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 256  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  28379047 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 28379091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 112 - 256
Target Start/End: Complemental strand, 45334553 - 45334409
Alignment:
Q  112 tactccctccattccttttcttttggtgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctcaagtttacc 211  Q
    ||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||||||||||| |||||||||| |||||||||||    
T  45334553 tactccctccattccttttcttttgatgttttagaactttaactatattccaaaacttttgatgttttagtgaatttgttattgttttttcaagtttacc 45334454  T
Q  212 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 256  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  45334453 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 45334409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 110 - 256
Target Start/End: Original strand, 25106209 - 25106355
Alignment:
Q  110 tatactccctccattccttttcttttggtgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctcaagttta 209  Q
    ||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||  |||||||||||||||||||||| |||||||| |||||||||    
T  25106209 tatactctctccattccttttcttttgatgttttagaacttcaactatattccaaaatttttgatgttttagtgaatttatgattgttttttcaagttta 25106308  T
Q  210 cccttgttggaaaacacaataaactattaaagtagttgtgacctttg 256  Q
    |||||| ||||||||||||||||||||||||||||||||||| ||||    
T  25106309 cccttgatggaaaacacaataaactattaaagtagttgtgacttttg 25106355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 111 - 256
Target Start/End: Original strand, 9739984 - 9740129
Alignment:
Q  111 atactccctccattccttttcttttggtgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctcaagtttac 210  Q
    |||||||||||||||||||||||||| |||||||||||||||  |||||| |||||| |||||||||||| |||||||||||||| |||||||||||||     
T  9739984 atactccctccattccttttcttttgatgttttagaacttcatgtatatttcaaaacttttgatgttttactgaatttattattgctttctcaagtttat 9740083  T
Q  211 ccttgttggaaaacacaataaactattaaagtagttgtgacctttg 256  Q
    |||||||| |||||||||||||||||||||||||||||||| ||||    
T  9740084 ccttgttgaaaaacacaataaactattaaagtagttgtgacatttg 9740129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 117 - 242
Target Start/End: Complemental strand, 13469777 - 13469652
Alignment:
Q  117 cctccattccttttcttttggtgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctcaagtttacccttgt 216  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| ||||||| ||||||| |||||||||||||||||||||||||    
T  13469777 cctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatattttagtaaatttataattgttttctcaagtttacccttgt 13469678  T
Q  217 tggaaaacacaataaactattaaagt 242  Q
    ||||||||||||||||||||||||||    
T  13469677 tggaaaacacaataaactattaaagt 13469652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 112 - 256
Target Start/End: Complemental strand, 38495749 - 38495605
Alignment:
Q  112 tactccctccattccttttcttttggtgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctcaagtttacc 211  Q
    |||| ||||||||| ||||||| || |||||||||||||||||||||||| ||||  ||||||||||| |||||||||||||||||||||||||||||||    
T  38495749 tacttcctccattctttttcttgtgatgttttagaacttcaactatattctaaaatttttgatgttttggtgaatttattattgttttctcaagtttacc 38495650  T
Q  212 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 256  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||    
T  38495649 cttgttggaaaacacaataaactattaaagtagttatgacatttg 38495605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 111 - 235
Target Start/End: Complemental strand, 27793469 - 27793345
Alignment:
Q  111 atactccctccattccttttcttttggtgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctcaagtttac 210  Q
    ||||||| ||||||| |||||||||| ||||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||    
T  27793469 atactccttccattcattttcttttgatgttttagatcttcaactatattccaaaacttttaatgttttagtgaatttattattgttttctcaagtttac 27793370  T
Q  211 ccttgttggaaaacacaataaacta 235  Q
     ||||||||||||||||||||||||    
T  27793369 tcttgttggaaaacacaataaacta 27793345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 156 - 256
Target Start/End: Complemental strand, 2626472 - 2626371
Alignment:
Q  156 atattccaaaacatttgatgttttagtgaatttattatt-gttttctcaagtttacccttgttggaaaacacaataaactattaaagtagttgtgacctt 254  Q
    |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  2626472 atattccaaaacttttgatgttttagtgaatttattatttgttttctcaagtttacccttgttggaaaacacaataaactattaaagtaattgtgacctt 2626373  T
Q  255 tg 256  Q
    ||    
T  2626372 tg 2626371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 109 - 256
Target Start/End: Complemental strand, 32183762 - 32183614
Alignment:
Q  109 atatactccctccattccttttcttttggtgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctcaagttt 208  Q
    ||||||||||| ||||  |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||  ||||| |||| ||||| |||||||    
T  32183762 atatactcccttcattttttttcttttgatgttttagaacttcaactatattccaaaatatttgatgttttagtatatttaatatttttttcccaagttt 32183663  T
Q  209 acccttgttggaaaacaca--ataaactattaaagtagttgtgacctttg 256  Q
    |||||||||||||||||||  |||||||||| ||| ||||| ||||||||    
T  32183662 acccttgttggaaaacacaccataaactatt-aaggagttgcgacctttg 32183614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 111 - 181
Target Start/End: Original strand, 27024432 - 27024502
Alignment:
Q  111 atactccctccattccttttcttttggtgttttagaacttcaactatattccaaaacatttgatgttttag 181  Q
    |||||||||||||||||||||||||| ||||||||| ||| |||| ||||||||||| |||||||||||||    
T  27024432 atactccctccattccttttcttttgatgttttagagcttaaactttattccaaaacttttgatgttttag 27024502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 111 - 179
Target Start/End: Complemental strand, 25979037 - 25978969
Alignment:
Q  111 atactccctccattccttttcttttggtgttttagaacttcaactatattccaaaacatttgatgtttt 179  Q
    |||||||||||||| ||||||||||| |||||||| ||||||||| |||| ||||||||||||||||||    
T  25979037 atactccctccatttcttttcttttgatgttttaggacttcaactttatttcaaaacatttgatgtttt 25978969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 111 - 180
Target Start/End: Original strand, 8235161 - 8235230
Alignment:
Q  111 atactccctccattccttttcttttggtgttttagaacttcaactatattccaaaacatttgatgtttta 180  Q
    ||||||||||||||  |||||||||| |||||||| ||||||| | |||| |||||||||||||||||||    
T  8235161 atactccctccatttattttcttttgatgttttaggacttcaattttatttcaaaacatttgatgtttta 8235230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 147 - 227
Target Start/End: Complemental strand, 3203492 - 3203413
Alignment:
Q  147 acttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctcaagtttacccttgttggaaaacaca 227  Q
    ||||||||||||||  |||| |||||||||||||||  ||||| |||| |||||||||||||| | |||||| ||||||||    
T  3203492 acttcaactatattttaaaatatttgatgttttagtatatttaatatt-ttttctcaagtttatctttgttgaaaaacaca 3203413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 108 - 145
Target Start/End: Complemental strand, 27027692 - 27027655
Alignment:
Q  108 aatatactccctccattccttttcttttggtgttttag 145  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  27027692 aatatactccctccattccttttcttttgatgttttag 27027655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 174
Target Start/End: Complemental strand, 2626701 - 2626667
Alignment:
Q  140 ttttagaacttcaactatattccaaaacatttgat 174  Q
    |||||||||||||||||||||||||||| ||||||    
T  2626701 ttttagaacttcaactatattccaaaacttttgat 2626667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 112 - 145
Target Start/End: Complemental strand, 25106488 - 25106455
Alignment:
Q  112 tactccctccattccttttcttttggtgttttag 145  Q
    ||||||||||||||||||||||||| ||||||||    
T  25106488 tactccctccattccttttcttttgatgttttag 25106455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 112 - 145
Target Start/End: Complemental strand, 28379224 - 28379191
Alignment:
Q  112 tactccctccattccttttcttttggtgttttag 145  Q
    ||||||||||||||||||||||||| ||||||||    
T  28379224 tactccctccattccttttcttttgatgttttag 28379191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 112 - 145
Target Start/End: Original strand, 33837729 - 33837762
Alignment:
Q  112 tactccctccattccttttcttttggtgttttag 145  Q
    ||||||||||||||||||||||||| ||||||||    
T  33837729 tactccctccattccttttcttttgatgttttag 33837762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 112 - 145
Target Start/End: Original strand, 45334276 - 45334309
Alignment:
Q  112 tactccctccattccttttcttttggtgttttag 145  Q
    ||||||||||||||||||||||||| ||||||||    
T  45334276 tactccctccattccttttcttttgatgttttag 45334309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 112 - 144
Target Start/End: Complemental strand, 9740263 - 9740231
Alignment:
Q  112 tactccctccattccttttcttttggtgtttta 144  Q
    ||||||||||||||||||||||||| |||||||    
T  9740263 tactccctccattccttttcttttgatgtttta 9740231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 130; Significance: 2e-67; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 111 - 256
Target Start/End: Original strand, 47669118 - 47669263
Alignment:
Q  111 atactccctccattccttttcttttggtgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctcaagtttac 210  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||  |||||||||||||||||||| |||||||||||||||||||||    
T  47669118 atactccctccattccttttcttttgatgttttagaacttcaactatattccaaaatttttgatgttttagtgaatttgttattgttttctcaagtttac 47669217  T
Q  211 ccttgttggaaaacacaataaactattaaagtagttgtgacctttg 256  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  47669218 ccttgttggaaaacacaataaactattaaagtagttgtgacctttg 47669263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 112 - 255
Target Start/End: Original strand, 46220259 - 46220402
Alignment:
Q  112 tactccctccattccttttcttttggtgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctcaagtttacc 211  Q
    ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||    
T  46220259 tactccctctattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttgttattgttttctcaagtttacc 46220358  T
Q  212 cttgttggaaaacacaataaactattaaagtagttgtgaccttt 255  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  46220359 cttgttggaaaacacaataaactattaaagtagttgtgaccttt 46220402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 110 - 250
Target Start/End: Original strand, 4817267 - 4817407
Alignment:
Q  110 tatactccctccattccttttcttttggtgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctcaagttta 209  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  4817267 tatactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttatcattgttttctcaagttta 4817366  T
Q  210 cccttgttggaaaacacaataaactattaaagtagttgtga 250  Q
    |||||||||||||||||||||||||||||| ||||||||||    
T  4817367 cccttgttggaaaacacaataaactattaaggtagttgtga 4817407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 112 - 256
Target Start/End: Complemental strand, 10737978 - 10737834
Alignment:
Q  112 tactccctccattccttttcttttggtgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctcaagtttacc 211  Q
    |||||||| |||||||||||||||  |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  10737978 tactcccttcattccttttcttttaatgttttagaacttcaactatattctaaaacttttgatgttttagtgaatttattattgttttctcaagtttacc 10737879  T
Q  212 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 256  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  10737878 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 10737834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 112 - 256
Target Start/End: Original strand, 9831503 - 9831647
Alignment:
Q  112 tactccctccattccttttcttttggtgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctcaagtttacc 211  Q
    ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||    
T  9831503 tactccctccattccttttcttttgatgttttagaatttcaactatattccaaaacttttgatgttttagtgaatttgttattattttctcaagtttacc 9831602  T
Q  212 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 256  Q
    ||||||||||||||||||||||||||||| |||||||||||||||    
T  9831603 cttgttggaaaacacaataaactattaaaatagttgtgacctttg 9831647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 112 - 256
Target Start/End: Original strand, 18126851 - 18126994
Alignment:
Q  112 tactccctccattccttttcttttggtgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctcaagtttacc 211  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  18126851 tactccctccattccttttcttttgatgttttagaacttcaactatattctaaaacttttgatgttttagtgaatttattattgttttctcaagtttacc 18126950  T
Q  212 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 256  Q
    ||||||||||||||||| |||||||| ||||||||||||| ||||    
T  18126951 cttgttggaaaacacaacaaactatt-aagtagttgtgacttttg 18126994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 112 - 256
Target Start/End: Complemental strand, 3384870 - 3384728
Alignment:
Q  112 tactccctccattccttttcttttggtgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctcaagtttacc 211  Q
    |||||||| ||||| |||||||||| ||||||||||| |||||||| |  |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  3384870 tactcccttcattctttttcttttgatgttttagaacctcaactattt--caaaacttttgatgttttagtgaatttattattgttttctcaagtttacc 3384773  T
Q  212 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 256  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  3384772 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 3384728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 111 - 248
Target Start/End: Original strand, 4055483 - 4055620
Alignment:
Q  111 atactccctccattccttttcttttggtgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctcaagtttac 210  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  4055483 atactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaattaattattgttttctcaagtttac 4055582  T
Q  211 ccttgttggaaaacacaataaactattaaagtagttgt 248  Q
    |||| ||||||||||||||  ||| |||||||||||||    
T  4055583 ccttattggaaaacacaattcactgttaaagtagttgt 4055620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 111 - 256
Target Start/End: Original strand, 48564817 - 48564961
Alignment:
Q  111 atactccctccattccttttcttttggtgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctcaagtttac 210  Q
    |||||||||||||| ||||||||| | ||||||| |||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  48564817 atactccctccattacttttcttt-gatgttttaaaacttcaactatattccaaaaattttgatgttttagtgaatttattattgttttctcaagtttac 48564915  T
Q  211 ccttgttggaaaacacaataaactattaaagtagttgtgacctttg 256  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||||    
T  48564916 ccttgatggaaaacacaataaactattaaagtagttgtgacttttg 48564961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 138 - 251
Target Start/End: Original strand, 8889468 - 8889581
Alignment:
Q  138 tgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctcaagtttacccttgttggaaaacacaataaactatt 237  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  8889468 tgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaagtttacccttgttgaaaaacacaataaactatt 8889567  T
Q  238 aaagtagttgtgac 251  Q
    ||||||||||||||    
T  8889568 aaagtagttgtgac 8889581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 113 - 256
Target Start/End: Original strand, 7414208 - 7414351
Alignment:
Q  113 actccctccattccttttcttttggtgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctcaagtttaccc 212  Q
    ||||||||||||| |||| ||||| |||||||||||||||||||||||  |||   ||||||||||||||||||||||||||||||||||||||||||||    
T  7414208 actccctccattcatttttttttgatgttttagaacttcaactatattttaaattttttgatgttttagtgaatttattattgttttctcaagtttaccc 7414307  T
Q  213 ttgttggaaaacacaataaactattaaagtagttgtgacctttg 256  Q
    |||||| |||||||||||||||||||||||||||||||| ||||    
T  7414308 ttgttgaaaaacacaataaactattaaagtagttgtgacatttg 7414351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 112 - 214
Target Start/End: Complemental strand, 1236307 - 1236205
Alignment:
Q  112 tactccctccattccttttcttttggtgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctcaagtttacc 211  Q
    |||||||||||||| |||||||||| ||||||||||||| |||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||    
T  1236307 tactccctccattcattttcttttgatgttttagaactttaactatattccaaaacttttgatggtttagtgaatttattattgttttctcaagtttacc 1236208  T
Q  212 ctt 214  Q
    |||    
T  1236207 ctt 1236205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 138 - 256
Target Start/End: Original strand, 39241178 - 39241296
Alignment:
Q  138 tgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctcaag-tttacccttgttggaaaacacaataaactat 236  Q
    |||||||||| |||||||||||| |||||| |||| ||||| |||||||||||||||||| | ||||| ||||| ||||||| ||||||| |||||||||    
T  39241178 tgttttagaa-ttcaactatatttcaaaacttttgttgtttcagtgaatttattattgttgtatcaagttttactcttgttgaaaaacaccataaactat 39241276  T
Q  237 taaagtagttgtgacctttg 256  Q
    ||||||||||||||| ||||    
T  39241277 taaagtagttgtgacttttg 39241296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 111 - 191
Target Start/End: Complemental strand, 1749601 - 1749521
Alignment:
Q  111 atactccctccattccttttcttttggtgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttatt 191  Q
    ||||| |||| ||||||||||||||| ||||||||||||| || ||||| ||||||| |||||||||||||||||||||||    
T  1749601 atacttcctctattccttttcttttgatgttttagaactttaattatataccaaaacttttgatgttttagtgaatttatt 1749521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 138 - 227
Target Start/End: Original strand, 26842465 - 26842552
Alignment:
Q  138 tgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctcaagtttacccttgttggaaaacaca 227  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||  ||||| |||  |||| ||||||||| |||||||| ||||||||    
T  26842465 tgttttagaacttcaactatatttcaaaatatttgatgttttagtatatttaatat--ttttttcaagtttatccttgttgaaaaacaca 26842552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 112 - 181
Target Start/End: Original strand, 33020206 - 33020275
Alignment:
Q  112 tactccctccattccttttcttttggtgttttagaacttcaactatattccaaaacatttgatgttttag 181  Q
    ||||||||||||||||||||||||| ||||||||| ||| |||| | ||||||||| |||||||||||||    
T  33020206 tactccctccattccttttcttttgatgttttagagcttaaacttttttccaaaacttttgatgttttag 33020275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 166 - 240
Target Start/End: Original strand, 37875846 - 37875920
Alignment:
Q  166 acatttgatgttttagtgaatttattattgttttctcaagtttacccttgttggaaaacacaataaactattaaa 240  Q
    |||||||||||||||||  ||||| | ||||||||||||||||| |||||||| |||| |||  | |||||||||    
T  37875846 acatttgatgttttagtatatttaatgttgttttctcaagtttatccttgttgaaaaatacaccatactattaaa 37875920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 111 - 227
Target Start/End: Complemental strand, 33846936 - 33846820
Alignment:
Q  111 atactccctccattccttttcttttggtgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttc-tcaagttta 209  Q
    ||||||||||||||  |||||||||| |||||||  ||||||| | ||||  |||| ||||||||||| |||  ||||| | || ||||| |||||||||    
T  33846936 atactccctccattt-ttttcttttgatgttttaagacttcaagtgtattttaaaatatttgatgtttcagtatatttaatttttttttcctcaagttta 33846838  T
Q  210 cccttgttggaaaacaca 227  Q
    ||||||||  ||||||||    
T  33846837 cccttgttaaaaaacaca 33846820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 111 - 227
Target Start/End: Original strand, 33947042 - 33947158
Alignment:
Q  111 atactccctccattccttttcttttggtgttttagaacttcaactatattccaaaacatttgatgttttagtgaattt-attattgttttctcaagttta 209  Q
    ||||||||||||||  |||||||||| |||||||  ||||||| | ||||  |||| ||||||||||| |||  |||| ||| || ||| ||||||||||    
T  33947042 atactccctccattt-ttttcttttgatgttttaagacttcaagtgtattttaaaatatttgatgtttcagtatatttaatttttttttcctcaagttta 33947140  T
Q  210 cccttgttggaaaacaca 227  Q
    ||||||||  ||||||||    
T  33947141 cccttgttaaaaaacaca 33947158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 145
Target Start/End: Original strand, 10737700 - 10737734
Alignment:
Q  111 atactccctccattccttttcttttggtgttttag 145  Q
    |||||||||||||||||||||||||| ||||||||    
T  10737700 atactccctccattccttttcttttgatgttttag 10737734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 145
Target Start/End: Complemental strand, 46220537 - 46220503
Alignment:
Q  111 atactccctccattccttttcttttggtgttttag 145  Q
    |||||||||||||||||||||||||| ||||||||    
T  46220537 atactccctccattccttttcttttgatgttttag 46220503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 112 - 145
Target Start/End: Complemental strand, 47669396 - 47669363
Alignment:
Q  112 tactccctccattccttttcttttggtgttttag 145  Q
    ||||||||||||||||||||||||| ||||||||    
T  47669396 tactccctccattccttttcttttgatgttttag 47669363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 146 - 227
Target Start/End: Complemental strand, 49112520 - 49112439
Alignment:
Q  146 aacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctcaagtttacccttgttggaaaacaca 227  Q
    ||||| |||||||||  |||| |||||||||||||||  |||||  ||||||||   || ||||||||||||| ||||||||    
T  49112520 aactttaactatattttaaaatatttgatgttttagtatatttaacattgtttttctaaatttacccttgttgaaaaacaca 49112439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 113 - 145
Target Start/End: Original strand, 1236071 - 1236103
Alignment:
Q  113 actccctccattccttttcttttggtgttttag 145  Q
    |||||||||||||||||||||||| ||||||||    
T  1236071 actccctccattccttttcttttgatgttttag 1236103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 143
Target Start/End: Complemental strand, 48565095 - 48565063
Alignment:
Q  111 atactccctccattccttttcttttggtgtttt 143  Q
    |||||||||||||||||||||||||| ||||||    
T  48565095 atactccctccattccttttcttttgatgtttt 48565063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 128; Significance: 3e-66; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 109 - 256
Target Start/End: Complemental strand, 43041129 - 43040982
Alignment:
Q  109 atatactccctccattccttttcttttggtgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctcaagttt 208  Q
    |||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||    
T  43041129 atatactccctccattccttttcttttgatgttttaaaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaatttt 43041030  T
Q  209 acccttgttggaaaacacaataaactattaaagtagttgtgacctttg 256  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||    
T  43041029 acccttgttggaaaacaccataaactattaaagtagttgtgacctttg 43040982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 114 - 256
Target Start/End: Original strand, 15233757 - 15233899
Alignment:
Q  114 ctccctccattccttttcttttggtgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctcaagtttaccct 213  Q
    ||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||    
T  15233757 ctccctctattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttgttattgttttctcaagtttaccct 15233856  T
Q  214 tgttggaaaacacaataaactattaaagtagttgtgacctttg 256  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  15233857 tgttggaaaacacaataaactattaaagtagttgtgacctttg 15233899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 111 - 256
Target Start/End: Complemental strand, 35793184 - 35793040
Alignment:
Q  111 atactccctccattccttttcttttggtgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctcaagtttac 210  Q
    ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||    
T  35793184 atactccctccattctttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagagaatttattattgtttt-tcaagtttac 35793086  T
Q  211 ccttgttggaaaacacaataaactattaaagtagttgtgacctttg 256  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||    
T  35793085 ccttgttggaaaacacaataaactattaaagtagttgtgacatttg 35793040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 111 - 256
Target Start/End: Original strand, 41252414 - 41252559
Alignment:
Q  111 atactccctccattccttttcttttggtgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctcaagtttac 210  Q
    |||||||||||||||||||||||||  |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| ||||||||||||     
T  41252414 atactccctccattccttttctttttatgttttagaacttcaaatatattccaaaacttttgatgttttagtgaatttattattgtgttctcaagtttat 41252513  T
Q  211 ccttgttggaaaacacaataaactattaaagtagttgtgacctttg 256  Q
    ||||||||||||| ||||||||||||||||||||||||||| ||||    
T  41252514 ccttgttggaaaatacaataaactattaaagtagttgtgacatttg 41252559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 110 - 250
Target Start/End: Original strand, 31296081 - 31296221
Alignment:
Q  110 tatactccctccattccttttcttttggtgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctcaagttta 209  Q
    |||||||| ||||||| |||||||||| |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||    
T  31296081 tatactccttccattctttttcttttgatgttttagaacttcaactatattctaaaacttttgatgttttagtgaatttattattgttttctcaaattta 31296180  T
Q  210 cccttgttggaaaacacaataaactattaaagtagttgtga 250  Q
    || |||||| |||||||||||||||||||||||||||||||    
T  31296181 cctttgttgaaaaacacaataaactattaaagtagttgtga 31296221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 112 - 255
Target Start/End: Complemental strand, 44104833 - 44104683
Alignment:
Q  112 tactccctccattccttttcttttggtgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctcaagtttacc 211  Q
    |||||||||| |||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||    
T  44104833 tactccctccgttccttttcttttgatgttttagaacttcaactatatttcaaaacttttgatgttttagtgaatttattattattttctcaagtttacc 44104734  T
Q  212 c-------ttgttggaaaacacaataaactattaaagtagttgtgaccttt 255  Q
    |       ||||||||||||||||||||||||||| |||||||||||||||    
T  44104733 cttataaattgttggaaaacacaataaactattaaggtagttgtgaccttt 44104683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 112 - 256
Target Start/End: Original strand, 41642891 - 41643038
Alignment:
Q  112 tactccctccattccttttcttttggtgtttt-agaacttcaactata--ttccaaaacatttgatgttttagtgaatttattattgttttctcaagttt 208  Q
    ||||||||||||| ||||||||||| |||||| |||| ||||||||||  ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  41642891 tactccctccatttcttttcttttgatgtttttagaatttcaactatatattccaaaacttttgatgttttagtgaatttattattgttttctcaagttt 41642990  T
Q  209 acccttgttggaaaacacaataaactattaaagtagttgtgacctttg 256  Q
    ||| ||  |||||||||| |||||||||||||||||||||||||||||    
T  41642991 accttttctggaaaacaccataaactattaaagtagttgtgacctttg 41643038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 127 - 256
Target Start/End: Complemental strand, 31903641 - 31903513
Alignment:
Q  127 ttttcttttggtgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctcaagtttacccttgttggaaaacac 226  Q
    |||| ||||| |||||||||||||||| |||||||||||   |||||||||||||| |||||||||||||||| ||| |||||||||| |||||||||||    
T  31903641 tttttttttgatgttttagaacttcaaatatattccaaattttttgatgttttagtaaatttattattgttttatca-gtttacccttattggaaaacac 31903543  T
Q  227 aataaactattaaagtagttgtgacctttg 256  Q
     |||||||||||||||||||||||||||||    
T  31903542 cataaactattaaagtagttgtgacctttg 31903513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 8 - 67
Target Start/End: Original strand, 28860056 - 28860115
Alignment:
Q  8 agttcattcataggaatatcatagttctttattgttttgaaagaagaatatcatagttct 67  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  28860056 agttcattcataagaatatcatagttctttattgttttgaaagaagaatatcatagttct 28860115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 51 - 100
Target Start/End: Original strand, 28860139 - 28860188
Alignment:
Q  51 aagaatatcatagttctgatttcaagtaaatgaataattagatacacata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28860139 aagaatatcatagttctgatttcaagtaaatgaataattagatacacata 28860188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 127 - 249
Target Start/End: Original strand, 21727684 - 21727809
Alignment:
Q  127 ttttcttttggtgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctcaagtttacccttgttg--gaaaac 224  Q
    |||||||||| ||||||||||||||||||||||| ||||| |||||||||||| ||  |  || |||| ||| | ||| |||||||||||||   |||||    
T  21727684 ttttcttttgatgttttagaacttcaactatatttcaaaatatttgatgttttggtataactaatattttttccccaaatttacccttgttgaaaaaaac 21727783  T
Q  225 acaat-aaactattaaagtagttgtg 249  Q
    ||||| |||||||||||| |||||||    
T  21727784 acaataaaactattaaaggagttgtg 21727809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 112 - 181
Target Start/End: Complemental strand, 10118729 - 10118660
Alignment:
Q  112 tactccctccattccttttcttttggtgttttagaacttcaactatattccaaaacatttgatgttttag 181  Q
    ||||||||||||||||||||||||| | ||||||| ||| |||| ||||||||||| |||||||||||||    
T  10118729 tactccctccattccttttcttttgatattttagagcttaaactttattccaaaacttttgatgttttag 10118660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 111 - 181
Target Start/End: Original strand, 36963130 - 36963200
Alignment:
Q  111 atactccctccattccttttcttttggtgttttagaacttcaactatattccaaaacatttgatgttttag 181  Q
    |||||| ||| ||||||||||||||  |||||||||| || |||| |||| ||||| ||||||||||||||    
T  36963130 atactcgctctattccttttcttttaatgttttagaatttaaactttatttcaaaaaatttgatgttttag 36963200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 145
Target Start/End: Original strand, 10112336 - 10112372
Alignment:
Q  109 atatactccctccattccttttcttttggtgttttag 145  Q
    |||||||||||||||||||||||||||| ||||||||    
T  10112336 atatactccctccattccttttcttttgatgttttag 10112372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 112 - 145
Target Start/End: Complemental strand, 15234032 - 15233999
Alignment:
Q  112 tactccctccattccttttcttttggtgttttag 145  Q
    ||||||||||||||||||||||||| ||||||||    
T  15234032 tactccctccattccttttcttttgatgttttag 15233999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 112 - 145
Target Start/End: Original strand, 43040849 - 43040882
Alignment:
Q  112 tactccctccattccttttcttttggtgttttag 145  Q
    ||||||||||||||||||||||||| ||||||||    
T  43040849 tactccctccattccttttcttttgatgttttag 43040882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 112 - 144
Target Start/End: Original strand, 44104546 - 44104578
Alignment:
Q  112 tactccctccattccttttcttttggtgtttta 144  Q
    ||||||||||||||||||||||||| |||||||    
T  44104546 tactccctccattccttttcttttgatgtttta 44104578  T

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Target: chr4 (Bit Score: 120; Significance: 2e-61; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 109 - 256
Target Start/End: Original strand, 45590739 - 45590886
Alignment:
Q  109 atatactccctccattccttttcttttggtgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctcaagttt 208  Q
    ||||||||||||||||| |||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||||||| ||||||||    
T  45590739 atatactccctccattcattttcttttgatgttttagaacttcaactatattctaaaacttttgatgttttagtgaattcattattgttttatcaagttt 45590838  T
Q  209 acccttgttggaaaacacaataaactattaaagtagttgtgacctttg 256  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  45590839 acctttgttggaaaacacaataaactattaaagtagttgtgacctttg 45590886  T

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Target: chr4; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 109 - 256
Target Start/End: Complemental strand, 8956056 - 8955909
Alignment:
Q  109 atatactccctccattccttttcttttggtgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctcaagttt 208  Q
    |||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||| |||||||||||||||||||| |||||||||| ||||||||    
T  8956056 atatactccctccattcctttttttttgatgttttagaacttcaactatattacaaaacttttgatgttttagtgaatttgttattgttttatcaagttt 8955957  T
Q  209 acccttgttggaaaacacaataaactattaaagtagttgtgacctttg 256  Q
    |||||| ||||||||||||||||| |||||||||||||||||||||||    
T  8955956 acccttattggaaaacacaataaattattaaagtagttgtgacctttg 8955909  T

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Target: chr4; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 122 - 256
Target Start/End: Original strand, 34334342 - 34334476
Alignment:
Q  122 attccttttcttttggtgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctcaagtttacccttgttggaa 221  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||||||||||||||| ||    
T  34334342 attccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgctttagtgaatttattattgtcttctcaagtttacccttgttgaaa 34334441  T
Q  222 aacacaataaactattaaagtagttgtgacctttg 256  Q
    ||||||||||||||||||||||||||||| |||||    
T  34334442 aacacaataaactattaaagtagttgtgatctttg 34334476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 111 - 256
Target Start/End: Complemental strand, 33288683 - 33288538
Alignment:
Q  111 atactccctccattccttttcttttggtgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctcaagtttac 210  Q
    |||||||||||||| ||||||||||| | |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  33288683 atactccctccatttcttttcttttgatattttagaacttcaattatattccaaaacttttgatgttttagtgaatttattattgttttctcaagtttac 33288584  T
Q  211 ccttgttggaaaacacaataaactattaaagtagttgtgacctttg 256  Q
    || ||||||||||||||||| |||  ||||||||||||||| ||||    
T  33288583 ccatgttggaaaacacaatatactgataaagtagttgtgacatttg 33288538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 118 - 256
Target Start/End: Original strand, 49162108 - 49162245
Alignment:
Q  118 ctccattccttttcttttggtgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctcaagtttacccttgtt 217  Q
    |||||||| |||||||||| ||||| |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||| |||| |||||||    
T  49162108 ctccattcattttcttttgatgtttcagaacttcaactatattccaaaatttttgatgttttagtgaatttattattgttttctcaatttta-ccttgtt 49162206  T
Q  218 ggaaaacacaataaactattaaagtagttgtgacctttg 256  Q
    ||||||||| ||||||||||||||||||||| |||||||    
T  49162207 ggaaaacaccataaactattaaagtagttgtaacctttg 49162245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 112 - 256
Target Start/End: Original strand, 18835705 - 18835851
Alignment:
Q  112 tactccctccattccttttcttttggtgttttagaacttcaactatattccaaaacatttgatgttttagtga--atttattattgttttctcaagttta 209  Q
    |||||||| ||||  |||||||||| |||||||||||||||||||||||||||||| || |||||||||||||  || ||||||||||||||||| ||||    
T  18835705 tactcccttcatttattttcttttgatgttttagaacttcaactatattccaaaactttcgatgttttagtgaatatatattattgttttctcaaattta 18835804  T
Q  210 cccttgttggaaaacacaataaactattaaagtagttgtgacctttg 256  Q
     ||||||| |||||||  |||||||||||||||||||||||| ||||    
T  18835805 tccttgttagaaaacatcataaactattaaagtagttgtgacatttg 18835851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 111 - 204
Target Start/End: Complemental strand, 30469446 - 30469353
Alignment:
Q  111 atactccctccattccttttcttttggtgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctcaa 204  Q
    ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  30469446 atactcccttcattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaa 30469353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 127 - 256
Target Start/End: Complemental strand, 50774325 - 50774191
Alignment:
Q  127 ttttcttttggtgttttagaacttcaactatattccaaaacatttgatg-----ttttagtgaatttattattgttttctcaagtttacccttgttggaa 221  Q
    |||| ||||| ||||||||||||| ||||||||| |||||| ||||||      ||||||||||||||||||||||||||||||||||| ||||||||||    
T  50774325 tttttttttgatgttttagaactttaactatatttcaaaacttttgatacagtattttagtgaatttattattgttttctcaagtttactcttgttggaa 50774226  T
Q  222 aacacaataaactattaaagtagttgtgacctttg 256  Q
    ||||||||||||||||||| |||| ||||| ||||    
T  50774225 aacacaataaactattaaattagtcgtgacttttg 50774191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 115 - 211
Target Start/End: Original strand, 39481906 - 39482002
Alignment:
Q  115 tccctccattccttttcttttggtgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctcaagtttacc 211  Q
    |||||||||| ||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||| |||||||    
T  39481906 tccctccatttcttttcttttgatgttttagaacttcaactattttccaaaacttttgatgttttagtaaatttattattgttttctcaggtttacc 39482002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 178 - 256
Target Start/End: Original strand, 36971115 - 36971192
Alignment:
Q  178 ttagtgaatttattattgttttctcaagtttacccttgttggaaaacacaataaactattaaagtagttgtgacctttg 256  Q
    |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||||||||||    
T  36971115 ttagtgaatttattattgttttctgaagtttacc-ttgttggaaaacacaataaactattaaaatagttgtgacctttg 36971192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 109 - 227
Target Start/End: Complemental strand, 26025803 - 26025685
Alignment:
Q  109 atatactccctccattcctttt-cttttggtgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctcaagtt 207  Q
    ||||||||||||||||  |||| |||||| |||||||| |||||||||||||||||||| ||||||  |||||||  ||||| |||| ||||| ||||||    
T  26025803 atatactccctccatttttttttcttttgatgttttaggacttcaactatattccaaaatatttgacattttagtatatttaatatt-ttttcccaagtt 26025705  T
Q  208 tacccttgttggaaaacaca 227  Q
    ||||||||||| ||||||||    
T  26025704 tacccttgttgaaaaacaca 26025685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 111 - 181
Target Start/End: Original strand, 19256185 - 19256255
Alignment:
Q  111 atactccctccattccttttcttttggtgttttagaacttcaactatattccaaaacatttgatgttttag 181  Q
    |||||||||||||||||||||||||| ||||||||| ||| |||| ||||||||||| |||||||||||||    
T  19256185 atactccctccattccttttcttttgatgttttagagcttaaactttattccaaaacttttgatgttttag 19256255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 111 - 162
Target Start/End: Original strand, 36016278 - 36016329
Alignment:
Q  111 atactccctccattccttttcttttggtgttttagaacttcaactatattcc 162  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  36016278 atactccctccattccttttcttttgatgttttagaacttcaactatattcc 36016329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 127 - 256
Target Start/End: Complemental strand, 33109163 - 33109031
Alignment:
Q  127 ttttcttttggtgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctcaagtttacccttgttggaaaacac 226  Q
    |||||||||  |||||||| ||||||||||||||  |||| | |||||||||||||  ||||| |||| |||||| ||||||| |||||||  |||||||    
T  33109163 ttttcttttaatgttttaggacttcaactatattttaaaataattgatgttttagtatatttaatatttttttcttaagtttatccttgttaaaaaacac 33109064  T
Q  227 a--at-aaactattaaagtagttgtgacctttg 256  Q
    |  || |||||||||||  ||||||||||||||    
T  33109063 accataaaactattaaatgagttgtgacctttg 33109031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 127 - 181
Target Start/End: Original strand, 36968353 - 36968407
Alignment:
Q  127 ttttcttttggtgttttagaacttcaactatattccaaaacatttgatgttttag 181  Q
    |||| ||||| |||||||||||||||||||||||||||||| |||||||||||||    
T  36968353 tttttttttgatgttttagaacttcaactatattccaaaacttttgatgttttag 36968407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 146
Target Start/End: Complemental strand, 19257137 - 19257103
Alignment:
Q  112 tactccctccattccttttcttttggtgttttaga 146  Q
    ||||||||||||||||||||||||| |||||||||    
T  19257137 tactccctccattccttttcttttgatgttttaga 19257103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 108 - 145
Target Start/End: Complemental strand, 49162369 - 49162332
Alignment:
Q  108 aatatactccctccattccttttcttttggtgttttag 145  Q
    ||||||||||||||||||| ||||||||| ||||||||    
T  49162369 aatatactccctccattccctttcttttgatgttttag 49162332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 109 - 256
Target Start/End: Original strand, 44616 - 44764
Alignment:
Q  109 atatactccctccattccttttcttt-tggtgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctcaagtt 207  Q
    ||||||||||| |||||||||||||| || ||||| |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||    
T  44616 atatactcccttcattccttttctttctgatgtttgagaacttcaactatattccaaaacttttgaggttttagtgaatttattattgttttctcaagtt 44715  T
Q  208 tacccttgttggaaaacacaataaactattaaagtagttgtgacctttg 256  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  44716 tacccttgttgaaaaacacaataaactattaaagtagttgtgacctttg 44764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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