View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5238-Insertion-2 (Length: 731)

Name: NF5238-Insertion-2
Description: NF5238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5238-Insertion-2
NF5238-Insertion-2
[»] chr6 (1 HSPs)
chr6 (8-731)||(29398716-29399439)


Alignment Details
Target: chr6 (Bit Score: 724; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 724; E-Value: 0
Query Start/End: Original strand, 8 - 731
Target Start/End: Original strand, 29398716 - 29399439
Alignment:
Q  8 tatatttggtttctaaacttacacccttattcaacaagttaacatttttctaatataaattaccatcatcattcatcatccacactagctagacttccct 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29398716 tatatttggtttctaaacttacacccttattcaacaagttaacatttttctaatataaattaccatcatcattcatcatccacactagctagacttccct 29398815  T
Q  108 tgtttcttctccacatagcaaaactaacaatgtcttcttcagatgaatcctttgttgctcatgtagctttccttccaagttctggtctaggtcatctcaa 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29398816 tgtttcttctccacatagcaaaactaacaatgtcttcttcagatgaatcctttgttgctcatgtagctttccttccaagttctggtctaggtcatctcaa 29398915  T
Q  208 tccatgtctaagaacagctgagttatttcttcgttatggctgcaaaatcactctcatcacaccaaaaccaacaatctctttagctgaatcagacctcatc 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29398916 tccatgtctaagaacagctgagttatttcttcgttatggctgcaaaatcactctcatcacaccaaaaccaacaatctctttagctgaatcagacctcatc 29399015  T
Q  308 actcagttttgttcttctttcccctcatctcaactcactcaaatagacttaaacctcatccctttagatccatcgattaacgttaacaccgtcgatccat 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29399016 actcagttttgttcttctttcccctcatctcaactcactcaaatagacttaaacctcatccctttagatccatcgattaacgttaacaccgtcgatccat 29399115  T
Q  408 tttggcttcagttcgaaaccattcgtcaatcacttcatcgccttttaccttcaattctaacaaaactatcatcttcaccatcatcgtcatcacctctctc 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29399116 tttggcttcagttcgaaaccattcgtcaatcacttcatcgccttttaccttcaattctaacaaaactatcatcttcaccatcatcgtcatcacctctctc 29399215  T
Q  508 agctttgatctatgatgttagtttgatttcacctttggtttccatcatggagagtttcacttttcctagctacatatatttcatagcaccagcaagaatg 607  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29399216 agctttgatctatgatgttagtttgatttcacctttggtttccatcatggagagtttcacttttcctagctacatatatttcatagcaccagcaagaatg 29399315  T
Q  608 ttttctttctttgcatatttatctgttctttctgagaaaagcaatgatggtaaacatttttcatgcattggtgatgctgttgaaatccctggaattgcac 707  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29399316 ttttctttctttgcatatttatctgttctttctgagaaaagcaatgatggtaaacatttttcatgcattggtgatgctgttgaaatccctggaattgcac 29399415  T
Q  708 caataccaaaatcttcattacctc 731  Q
    ||||||||||||||||||||||||    
T  29399416 caataccaaaatcttcattacctc 29399439  T

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