View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5238-Insertion-3 (Length: 566)
Name: NF5238-Insertion-3
Description: NF5238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5238-Insertion-3 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 515; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 515; E-Value: 0
Query Start/End: Original strand, 8 - 566
Target Start/End: Original strand, 3284401 - 3284958
Alignment:
| Q |
8 |
gtaaacagtgttttcagtggaatttataatcccagttaatgcaatgcagttcctcactctggtcaggtggaatataaactctgctacaaaacaaaacatg |
107 |
Q |
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| T |
3284401 |
gtaaacagtgttttcagtggaatttataatcccagttaatgcaatgcagttcctcactctggtcaggtggaatataaactctgctacaaaacaaaacatg |
3284500 |
T |
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| Q |
108 |
tattcaatttcatgcagagtgaatcagttgcataacgttagttgctcgcatctttcactctttcatgttcgaagacctccaatctatgtaccatgctcga |
207 |
Q |
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| T |
3284501 |
tattcaatttcatgcagagtgaatcagttgcataacgttagttgctcgcatctttcactctttcatgttcgaagacctccaatctatgtaccatgctcga |
3284600 |
T |
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| Q |
208 |
ccaacctttcttctatattctcaattccttcgggttcacacttcctacgaagtaactcagtctctcattgtgtatacacccatttcttttcttccacgtt |
307 |
Q |
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| T |
3284601 |
ccaacctttcttctatattctcaattccttcgggttcacacttcctaagaagtaactcaatctctcattgtgtatacacccatttcttttcttccacgtt |
3284700 |
T |
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| Q |
308 |
ttctatatacaaagaataatcaattattttagcctcgttgtttttgttgttggcttcacagagtacaggagctccaagtttcttctcaaatgcgcttcgc |
407 |
Q |
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| T |
3284701 |
ttctatatacaaagaataatcaattattttagcctcgttgtttttgttgttggcttcacagagtacaggagctccaagtttcttctcaaatgcgcgtcgc |
3284800 |
T |
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| Q |
408 |
taaactcttcaggttccctgacacctgatccaatcccacaggtactttcctatcatttcttgctccacagccatggacaaatatgtgaactatgaagcat |
507 |
Q |
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| T |
3284801 |
taaactcttcaggttccctgacacctgatccaatcccacaggtactttcctatcatttcttgctccacagccatggacaaatatgtgaactatgaagcat |
3284900 |
T |
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| Q |
508 |
gggacatgtctctagctggtgnnnnnnnnnctttctggatgatgacaacacgctttggt |
566 |
Q |
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| T |
3284901 |
gggacatgtctctagctggtg-ttttttttctttctggatgatgacaacacgctttggt |
3284958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 2e-26; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 25 - 227
Target Start/End: Complemental strand, 32752981 - 32752776
Alignment:
| Q |
25 |
tggaatttataatcccagttaatgcaatgcagttcctcactct--------ggtcaggtggaatataaactctgctacaaaacaaaacatgtattcaatt |
116 |
Q |
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| T |
32752981 |
tggaatctataatcccagttaatgcaccgtagttcctcactctatctagctggtcaagttgaatataaactctgcttcaaaaca-----tgcattcaatt |
32752887 |
T |
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| Q |
117 |
tcatgcagagtgaatcagttgcataacgttagttgctcgcatctttcactctttcatgttcgaagacctccaatctatgtaccatgctcgaccaaccttt |
216 |
Q |
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| T |
32752886 |
tgaggcagagtgaatcagatgcataatgttagttgctcacgtctttcactcttttatgtttgatcacatccaatttatgtgccatgttcgaccaatgttt |
32752787 |
T |
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| Q |
217 |
cttctatattc |
227 |
Q |
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| T |
32752786 |
cttctaaattc |
32752776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 276 - 381
Target Start/End: Complemental strand, 32752727 - 32752622
Alignment:
| Q |
276 |
tgtgtatacacccatttcttttcttccacgttttctatatacaaagaataatcaattatttta-gcctcgttgtttttgttgttggcttcacagagtaca |
374 |
Q |
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| T |
32752727 |
tgtgtatacaaccatttctttt-ttccacgctttctatctacaaataacactcgatcattttatgcctacttgcttttgttgttggtttcgcagagtaca |
32752629 |
T |
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| Q |
375 |
ggagctc |
381 |
Q |
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| T |
32752628 |
ggagctc |
32752622 |
T |
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Back To:
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