View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5238-Insertion-4 (Length: 472)
Name: NF5238-Insertion-4
Description: NF5238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5238-Insertion-4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 95 - 470
Target Start/End: Original strand, 35864467 - 35864837
Alignment:
| Q |
95 |
caattttaatagtacatgacaatattattctctatcttcatcatcatcgtccatagttttgttttgtctttcttcttattcttacctcattccnnnnnnn |
194 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35864467 |
caattttaatagtacatgacaatattattctctatcttcatcatcatcgttcatagttttgttttgtctttcttcttattcttacctcattccttttttt |
35864566 |
T |
|
| Q |
195 |
caatttcaaaccttttcctgtccctctctctcaatcaaatgaatttcttcaacccctctgacgaaaataaaaatcatctttttacccacccagaattgac |
294 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
35864567 |
caatttcaaaccttttcctgtccctctctctcaatcaaatgaatttcttcaacccctctgacgaaaaaaaaaaacatctttttacccacccagaattgac |
35864666 |
T |
|
| Q |
295 |
acaaccacatttctcaattttccgacgagaatcttattagggttaatcggagaaggtggttgnnnnnnnnnncaatttaggaggttggtgnnnnnnnnnn |
394 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
35864667 |
acaaccacatttctcaattttccgacgagaatcttattagggttaatcggagaaggtggttgttttttttttcaattaaggaggttggtg----tttttt |
35864762 |
T |
|
| Q |
395 |
nnnnctgttaacgttagcaccgggtgcgtagggattaggagccttgagaaaatcaagtggggttttgctttaatcg |
470 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||| |||| ||||||| ||||||||||||||| |
|
|
| T |
35864763 |
ttttctgttaacgttagcaccgggtgcgta-ggattaggagccttgaaaaaaacaagtggtgttttgctttaatcg |
35864837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 8 - 78
Target Start/End: Original strand, 35864354 - 35864424
Alignment:
| Q |
8 |
aaaagcattcaacaccataatcgtcatttcacataaacatcccccaaataaaaaccactacccattgaaac |
78 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35864354 |
aaaagcattcaaccccataatcgtcatttcacataaacatcccccaaataaaaaccactacccattgaaac |
35864424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University