View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5238-Insertion-9 (Length: 366)
Name: NF5238-Insertion-9
Description: NF5238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5238-Insertion-9 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 8 - 366
Target Start/End: Original strand, 5052954 - 5053312
Alignment:
| Q |
8 |
aaagagtgggaggtaaatgtttacattgataattgaatcattaaaagttaaaacacttaataaatcatgcaaaacttcatttcttatgcatcgaatagag |
107 |
Q |
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| T |
5052954 |
aaagagtgggaggtaaatgtttacattgataattgaatcattaaaagttaaaacacttaataaatcatgcaaaacttcatttcttatgcatcgaatagag |
5053053 |
T |
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| Q |
108 |
atatcaacacaagcataaaaaagaattaatttattataggcatgcagtgcaagacataatcaaacaaagagacagctcatgcacaaacatgtcagataac |
207 |
Q |
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| T |
5053054 |
atatcaacacaagcataaaaaagaattaatttattataggcatgcagtgcaagacataatcaaacaaagagacagctcatgcacaaacatgtcagataac |
5053153 |
T |
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| Q |
208 |
aacacttaaaagaatccaaattatagacaattcttaaatatgatcaatacttttttcccttctttctcataacattccaaacaagaacaaaaggaatatc |
307 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5053154 |
aacactcaaaagaatccaaattatagacaattcttaaatatgatcaatacttttttcccttctttctcataacattccaaacaagaacaaaaggaatatc |
5053253 |
T |
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| Q |
308 |
agattcgttttaaccctttagaggtcctgaagctaatactctcagaacacatctctttc |
366 |
Q |
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| T |
5053254 |
agattcgttttaaccctttagaggtcctgaagctaatactctcagaacacatctctttc |
5053312 |
T |
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