View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5238_low_4 (Length: 267)
Name: NF5238_low_4
Description: NF5238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5238_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 17486293 - 17486071
Alignment:
| Q |
1 |
atatgatccaacagatcttagaggagnnnnnnntaaaagatgtttgttgcaagaagcttcaagaattcaaataagaataagattttatggaacaaaaaca |
100 |
Q |
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| T |
17486293 |
atatggtccaacagatcttagaggagaaaaaaataaaagatgtttgttgcaagaagcttcaagaattcaaataagaataagattttatggaacaaaaaca |
17486194 |
T |
|
| Q |
101 |
agacgtttagctataattgaattattttgacagaattatccctaatgtttcttatgtgtagttaattaagtttggctagtttgataatttacgttgaatg |
200 |
Q |
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|||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17486193 |
agacgtttagctataattaaattattttgacagaattatctctaatgttgcttatgtgtagttaattaagtttggctagtttgataatttacgttgaatg |
17486094 |
T |
|
| Q |
201 |
tcattattttcttaaataatatc |
223 |
Q |
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| | ||||||||||||||||||| |
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| T |
17486093 |
ttagtattttcttaaataatatc |
17486071 |
T |
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