View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5239_low_1 (Length: 454)
Name: NF5239_low_1
Description: NF5239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5239_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 8 - 436
Target Start/End: Complemental strand, 39738919 - 39738491
Alignment:
| Q |
8 |
agattatactatgtgaccgtgggatgaatgcaagggttcagaaaggagctgtggtgaaagcagctggaggattgggtatggttctgagcaacacagccgc |
107 |
Q |
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| T |
39738919 |
agattgtactatgtgaccgtgggatgaatgctagggttcagaaaggagctgtggtgaaagcagctggaggattgggtatggttctgagcaacacagccgc |
39738820 |
T |
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| Q |
108 |
gaatggcgaggagcttgtagcagatactcatcttttaccggccacagcggtcggtgaaagagaaggcaatgcaatcaagaagtacttattttccgaagca |
207 |
Q |
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| T |
39738819 |
gaatggcgaggagcttgtagcagatactcatcttttaccggccacagcggtcggtgaaagagaaggcaatgcaatcaagaagtacttattttccgaagca |
39738720 |
T |
|
| Q |
208 |
aaaccaacagtgaagattgtgtttcaaggaactaaggttggagttgagccttcacccgttgtcgctgcatttagctcacgtggacctaattcaatcacac |
307 |
Q |
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| T |
39738719 |
aaaccaacagtgaagattgtgtttcaaggaactaaggttggagttgagccttcaccggttgtcgcggcatttagctcacgtggacctaattcgatcacac |
39738620 |
T |
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| Q |
308 |
cgcagatcttgaaacctgacctaatagcaccaggtgtcaacatcttagcggggtggtcgaaggcagtaggtcccactggcttagccgttgatgagagacg |
407 |
Q |
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| T |
39738619 |
cacagatcttgaaacctgacctaatagcaccaggtgtcaacatcttagcggggtggtcgaaggcagtaggtcccactggcttagccgttgatgagagacg |
39738520 |
T |
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| Q |
408 |
tgtagattttaacattatctctggaacat |
436 |
Q |
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| T |
39738519 |
tgtagattttaacattatctctggaacat |
39738491 |
T |
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