View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5239_low_4 (Length: 279)
Name: NF5239_low_4
Description: NF5239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5239_low_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-126; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 18 - 273
Target Start/End: Complemental strand, 6242779 - 6242525
Alignment:
| Q |
18 |
agaagccctatatatctttctcccttcaagtttatcttaatcaaaaccccattactcacaaaacctctctaaatttaatcagttacgcatcttctacact |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
6242779 |
agaagccctatatatctttctcccttcaagtttatcttaatcaaaaccc-atcactcacaaaacctctctaaaattaatcagttacgcatcttctacact |
6242681 |
T |
|
| Q |
118 |
ctgaaaacacactctttacttcaaatctttcttcgccgctgtcgttcatcgccactgtcgtcttttgtttgtatagttttatccatgtcgtcgtcgactc |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
6242680 |
ctgaaaacacactctttacttcaaatctttcttcgccgctgtcgttcatcgccactgtcgtcttttgtttgtatagttttatccatgccgtcgtcgactc |
6242581 |
T |
|
| Q |
218 |
attctctaggtgtgaatatccataacttcattagctttatcggtggatattttctt |
273 |
Q |
| |
|
|||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6242580 |
attctcaaggtatgaatatccataacttcattagctttatcggtggatattttctt |
6242525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 177 - 228
Target Start/End: Complemental strand, 6227189 - 6227138
Alignment:
| Q |
177 |
gtcttttgtttgtatagttttatccatgtcgtcgtcgactcattctctaggt |
228 |
Q |
| |
|
||||||||||||| ||||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
6227189 |
gtcttttgtttgtttagttttatccatgttgtcgtcgactcattctcaaggt |
6227138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 270
Target Start/End: Complemental strand, 6234302 - 6234265
Alignment:
| Q |
233 |
atatccataacttcattagctttatcggtggatatttt |
270 |
Q |
| |
|
||||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
6234302 |
atatccataactttattagctttatcggttgatatttt |
6234265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 273
Target Start/End: Original strand, 17544057 - 17544095
Alignment:
| Q |
235 |
atccataacttcattagctttatcggtggatattttctt |
273 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
17544057 |
atccataacttcattagctttatcggtagatattttctt |
17544095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 177 - 228
Target Start/End: Original strand, 17543974 - 17544025
Alignment:
| Q |
177 |
gtcttttgtttgtatagttttatccatgtcgtcgtcgactcattctctaggt |
228 |
Q |
| |
|
||||||||||||| |||||||||| ||||| ||||||||||| |||| |||| |
|
|
| T |
17543974 |
gtcttttgtttgtttagttttatcaatgtcttcgtcgactcactctcaaggt |
17544025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University