View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5240-Insertion-1 (Length: 708)
Name: NF5240-Insertion-1
Description: NF5240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5240-Insertion-1 |
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| [»] chr4 (1 HSPs) |
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| [»] scaffold0662 (1 HSPs) |
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| [»] scaffold0011 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 675; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 675; E-Value: 0
Query Start/End: Original strand, 14 - 708
Target Start/End: Original strand, 47013546 - 47014239
Alignment:
| Q |
14 |
aagataataatactagtaacaataattaataaattacctaatagtagtacatcacaccaccacatatacccaaaaacaaattgtgcatcatccaaaagta |
113 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47013546 |
aagataataatactagtaacaataattaataaattacctaatagtagtacatcacaccaccacatatacccaaaaacaaattgtgcatcatccaaaagta |
47013645 |
T |
|
| Q |
114 |
acaaattttgtattcaaaaatgagatcgacgagttgaatcagttctggctgtcgctcttccttccggtcccttctccgtctctctgttccaacaaccttc |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47013646 |
acaaattttgtattcaaaaatgagatcgacgagttgaatcagttctggctgtcgctcttccttccggtcccttctccgtctctctgttccaacaaccttc |
47013745 |
T |
|
| Q |
214 |
cagcttcttcatcactctgttgagccttcttctgcgtctcggaggccttaagagcctgcaacttcgaatgattataatacgcaacccccaaaaacgccaa |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47013746 |
cagcttcttcatcactctgttgagccttcttctgcgtctcggaggccttaagagcctgcaacttcgaatgattataatacgcaacccccaaaaacgccaa |
47013845 |
T |
|
| Q |
314 |
cccataaccaatcaaattaatcggtgtcacggtatccttaatcaccgaccacgagaatgcaatcaacaaccaatccttaacaaccccagcaacattcata |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47013846 |
cccataaccaatcaaattaatcggtgtcacagtatccttaatcaccgaccacgagaatgcaatcaacaaccaatccttaacaaccccagcaacattcata |
47013945 |
T |
|
| Q |
414 |
gtcaaagccgacgtcttcccaaccaacaaaaacacagcaagattcaaagcaaaagcacacagcgaatttgtcccaaaaatcgcgaaatccaaatggaaac |
513 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47013946 |
gtcaaagccgacgtcttcccaaccaacaaaaacacagcaagattcaaagcaaaagcacacagcgaatttgtcccaaaaatcgcgaaatccaaatggaaac |
47014045 |
T |
|
| Q |
514 |
tcgagttatccctcaatgaaggatactcaacaatcagccaaggaacagataaaaacaccaaacaacacgggtgcaatgtaatacaacgaagtaatcggat |
613 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
47014046 |
tcgagttatccctcaacgaaggatactcaacaatcagccaaggaacagataaaaacaccaaacaacac-ggtgcaatgtaatacaacgaagtaatcggat |
47014144 |
T |
|
| Q |
614 |
tcaacgaaatccccttagaattaagcaaaatctgaatcaaaaccaaacgtgtagcttcaaaagcaacagccataagctggagtgtaacaccccaa |
708 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
47014145 |
tcaacgaaatccccttagaattaagcaaaatctgaatcaaaaccaaacgtgtagcttcaaaagcaacagccataagctgaagtgtaacaccccaa |
47014239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0662 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: scaffold0662
Description:
Target: scaffold0662; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 330 - 708
Target Start/End: Original strand, 1 - 378
Alignment:
| Q |
330 |
ttaatcggtgtcacggtatccttaatcaccgaccacgagaatgcaatcaacaaccaatccttaacaaccccagcaacattcatagtcaaagccgacgtct |
429 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1 |
ttaatcggtgtcacagtatccttaatcaccgaccacgagaatgcaatcaacaaccaatccttaacaaccccagcaacattcatagtcaaagccgacgtct |
100 |
T |
|
| Q |
430 |
tcccaaccaacaaaaacacagcaagattcaaagcaaaagcacacagcgaatttgtcccaaaaatcgcgaaatccaaatggaaactcgagttatccctcaa |
529 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
101 |
tcccaaccaacaaaaacacagcaagattcaaagcaaaagcacacagcgaatttgtcccaaaaatcgcgaaatccaaatggaaactcgagttatccctcaa |
200 |
T |
|
| Q |
530 |
tgaaggatactcaacaatcagccaaggaacagataaaaacaccaaacaacacgggtgcaatgtaatacaacgaagtaatcggattcaacgaaatcccctt |
629 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
201 |
cgaaggatactcaacaatcagccaaggaacagataaaaacaccaaacaacac-ggtgcaatgtaatacaacgaagtaatcggattcaacgaaatcccctt |
299 |
T |
|
| Q |
630 |
agaattaagcaaaatctgaatcaaaaccaaacgtgtagcttcaaaagcaacagccataagctggagtgtaacaccccaa |
708 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
300 |
agaattaagcaaaatctgaatcaaaaccaaacgtgtagcttcaaaagcaacagccataagctgaagtgtaacaccccaa |
378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011 (Bit Score: 111; Significance: 1e-55; HSPs: 1)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 282 - 704
Target Start/End: Complemental strand, 242768 - 242347
Alignment:
| Q |
282 |
tgattataatacgcaacccccaaaaacgccaacccataaccaatcaaattaatcggtgtcacggtatccttaatcaccgaccacgagaatgcaatcaaca |
381 |
Q |
| |
|
||||||||||| |||||||||||||| || | ||||||||||||||||| | ||||| || |||||||||||||| ||||| || |||||||| | || |
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|
| T |
242768 |
tgattataataagcaacccccaaaaatgcaagtccataaccaatcaaattgagtggtgtaacagtatccttaatcactgaccaagaaaatgcaataagca |
242669 |
T |
|
| Q |
382 |
accaatccttaacaaccccagcaacattcatagtcaaagccgacgtcttcccaaccaacaaaaacacagcaagattcaaagcaaaagcacacagcgaatt |
481 |
Q |
| |
|
|||||||||| ||||| |||||||||||||| ||||||||||| ||||||||||| | ||||||||||||||| ||||||||||||||||||| |||||| |
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| T |
242668 |
accaatccttcacaacaccagcaacattcatcgtcaaagccgaagtcttcccaacaagcaaaaacacagcaaggttcaaagcaaaagcacacaacgaatt |
242569 |
T |
|
| Q |
482 |
tgtcccaaaaatcgcgaaatccaaatggaaactcgagttatccctcaatgaaggatactcaacaatcagccaaggaacagataaaaacaccaaacaacac |
581 |
Q |
| |
|
| || |||| | ||||| ||| ||||| | ||||||||||| |||||||||| | || | |||||||| || ||||| ||||||||||| |
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|
| T |
242568 |
acttccgaaaacccaaaaatcaaaactcaaacttgctttatccctcaacaaaggatactccataacgaaccaaggaaacgacaaaaaaaccaaacaaca- |
242470 |
T |
|
| Q |
582 |
gggtgcaatgtaatacaacgaagtaatcggattcaacgaaatccccttagaattaagcaaaatctgaatcaaaaccaaacgtgtagcttcaaaagcaaca |
681 |
Q |
| |
|
|| |||||||| || | ||| ||||| ||||||||| |||||| || || || | | ||| ||||| |||||||| | || |||||||| || ||| |
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| T |
242469 |
aggagcaatgtagtaaagcgaggtaataggattcaacttaatccctttcgagttcaaaagaatttgaattaaaaccaacctcgtggcttcaaacgctaca |
242370 |
T |
|
| Q |
682 |
gccataagctggagtgtaacacc |
704 |
Q |
| |
|
||||| ||||| || |||||||| |
|
|
| T |
242369 |
gccatgagctgtagcgtaacacc |
242347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 106; Significance: 1e-52; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 258 - 683
Target Start/End: Complemental strand, 49575497 - 49575073
Alignment:
| Q |
258 |
gccttaagagcctgcaacttcgaatgattataatacgcaacccccaaaaacgccaacccataaccaatcaaattaatcggtgtcacggtatccttaatca |
357 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||||| || || ||||| || || | ||||| |||| ||||||||| ||||| || ||||||||||||| |
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|
| T |
49575497 |
gccttaagtgcctgcaactttgaatgattataataagccacacccaagaaagcaagaccatacccaaacaaattaatgggtgtaacagtatccttaatca |
49575398 |
T |
|
| Q |
358 |
ccgaccacgagaatgcaatcaacaaccaatccttaacaaccccagcaacattcatagtcaaagccgacgtcttcccaaccaacaaaaacacagcaagatt |
457 |
Q |
| |
|
| ||| || || |||||||| | |||||| |||||||| |||||||||||||| |||||||| || || |||||||| | | ||| ||||||||||| |
|
|
| T |
49575397 |
cactccatgaaaaagcaatcaaaagccaatctttaacaacaccagcaacattcattgtcaaagcagatgttttcccaacaagaagaaaaacagcaagatt |
49575298 |
T |
|
| Q |
458 |
caaagcaaaagcacacagcgaatttgtcccaaaaatcgcgaaatccaaatggaaactcgagttatccctcaatgaaggatactcaacaatcagccaagga |
557 |
Q |
| |
|
||||||||| ||||||| ||||| ||||||||||| | ||||| ||||| ||||| || || || |||| ||||| || |||| | ||||||| |
|
|
| T |
49575297 |
caaagcaaatgcacacaaagaattagtcccaaaaatgacaaaatcaaaatgaaaacttgaattctctttcaaaattggatattccacaaggatccaagga |
49575198 |
T |
|
| Q |
558 |
acagataaaaacaccaaacaacacgggtgcaatgtaatacaacgaagtaatcggattcaacgaaatccccttagaattaagcaaaatctgaatcaaaacc |
657 |
Q |
| |
|
||||| || || ||||||||||| ||||||| |||||||| || ||||| |||||||| |||||||| || || ||||||| || ||||||| |||| |
|
|
| T |
49575197 |
acagacaagaaaaccaaacaaca-aggtgcaacataatacaaggacgtaattggattcaatgaaatccctttggatgtaagcaagatttgaatcataacc |
49575099 |
T |
|
| Q |
658 |
aaacgtgtagcttcaaaagcaacagc |
683 |
Q |
| |
|
|| | |||||||| ||||||||||| |
|
|
| T |
49575098 |
aatctggtagcttcgaaagcaacagc |
49575073 |
T |
|
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