View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5240-Insertion-2 (Length: 629)
Name: NF5240-Insertion-2
Description: NF5240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5240-Insertion-2 |
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Alignment Details
Target: chr4 (Bit Score: 361; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 188 - 625
Target Start/End: Complemental strand, 9977475 - 9977039
Alignment:
| Q |
188 |
tttttgtgcatggcatttatttcctgcaaatttctggcggctttcaagacttttcaatttaatttttccaatttcatgcagatttctctgaggattttaa |
287 |
Q |
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| T |
9977475 |
tttttgtgcatggcatttatttcctgcaaatttctggcggctttcaagacttttcaatttaatttttccaatttcatgcagatttctctgaggattttaa |
9977376 |
T |
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| Q |
288 |
tattttaatcacaatcttactttacgtaaatattttttcaatggcaaatgaaatgacgtgcttctaggttcctnnnnnnngtagggcattttcatacata |
387 |
Q |
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| T |
9977375 |
tatattaatcacaatcttactttacgtaaatattttttcaatggcaaatgaaatgacgtgcttctaggttc-taaaaaaagtagagcattttcatacata |
9977277 |
T |
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| Q |
388 |
tttttcaatggagggttagttttgtatatatcttttaaaagtaggttgttttagaaaagaaactctcaaacaacaaacaaaacttattccattaagtggg |
487 |
Q |
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| T |
9977276 |
tttttcaatggagggttagttttgtatatatcttttaaaagtgggttgttttagaaaagaaactctcaaacaacaaacaaaacttattccattaagtggg |
9977177 |
T |
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| Q |
488 |
gcggttacatggattaaattatggcaccgtagtgttctatcacaaatcatatttagattattcttcactgttttcaagtggcgatgcatcgacccttact |
587 |
Q |
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| T |
9977176 |
gcggttacatggattaaattatggcgccgtagtgttctatcataaatcatatttagattatttttcactgtttccaagtggcgatgcatcgacccttgct |
9977077 |
T |
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| Q |
588 |
catttgacattgtactcaagctgtatagtgtgttgctt |
625 |
Q |
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| T |
9977076 |
catttgaaactgtactcgagctgtatagcgtgttgctt |
9977039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 122 - 192
Target Start/End: Complemental strand, 9977638 - 9977568
Alignment:
| Q |
122 |
taatcgacatttgaaaaatatatacaaaactaccctacattgaaaatatatatcaaaatgtcctatttttt |
192 |
Q |
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| T |
9977638 |
taatcgacttttgaaaaatatatacaaaactaccctacattgaaaatatatatcaaaatgccctatttttt |
9977568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 586 - 627
Target Start/End: Complemental strand, 42232218 - 42232177
Alignment:
| Q |
586 |
ctcatttgacattgtactcaagctgtatagtgtgttgctttc |
627 |
Q |
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| T |
42232218 |
ctcatttgacaatgtactcaagttatatagtgtgttgctttc |
42232177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 456 - 541
Target Start/End: Complemental strand, 14911452 - 14911369
Alignment:
| Q |
456 |
aacaacaaacaaaacttattccattaagtgggg-cggttacatggattaaattatggcaccgtagtgttctatcacaaatcatattt |
541 |
Q |
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| T |
14911452 |
aacaacaaccaaaccttattccattaagtggggtcggctacatggatcaaatgacgcca---tagtattctatcaaaaatcatattt |
14911369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 456 - 541
Target Start/End: Original strand, 26884691 - 26884774
Alignment:
| Q |
456 |
aacaacaaacaaaacttattccattaagtgggg-cggttacatggattaaattatggcaccgtagtgttctatcacaaatcatattt |
541 |
Q |
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| T |
26884691 |
aacaacaatcaagccttattccactaagtggggtcggctacatggatcaaatt---gcgtcgtagtgttctatcataaatcatattt |
26884774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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