View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5240-Insertion-5 (Length: 97)
Name: NF5240-Insertion-5
Description: NF5240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5240-Insertion-5 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 68; Significance: 6e-31; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 6e-31
Query Start/End: Original strand, 9 - 76
Target Start/End: Complemental strand, 40842174 - 40842107
Alignment:
| Q |
9 |
cttcctttgttcaattacaattttgattatagatttatagtattcaattacttgtctcattatagtta |
76 |
Q |
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| T |
40842174 |
cttcctttgttcaattacaattttgattatagatttatagtattcaattacttgtctcattatagtta |
40842107 |
T |
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Target: chr8; HSP #2
Raw Score: 48; E-Value: 5e-19
Query Start/End: Original strand, 9 - 97
Target Start/End: Complemental strand, 41958988 - 41958908
Alignment:
| Q |
9 |
cttcctttgttcaattacaattttgattatagatttatagtattcaattacttgtctcattatagttatgatcaacatctccttaattt |
97 |
Q |
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| T |
41958988 |
cttcctttgttcaattacaattttgattacag--------tattcaattacctgtctcattataattatgatcaacatctccttaattt |
41958908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 5e-19; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 5e-19
Query Start/End: Original strand, 9 - 97
Target Start/End: Original strand, 9992936 - 9993016
Alignment:
| Q |
9 |
cttcctttgttcaattacaattttgattatagatttatagtattcaattacttgtctcattatagttatgatcaacatctccttaattt |
97 |
Q |
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||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |||| ||||||||||||||||||| |
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| T |
9992936 |
cttcctttgttcaattacaattttgattacag--------tattcaattacttgtctcattataattataatcaacatctccttaattt |
9993016 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 1e-16
Query Start/End: Original strand, 9 - 97
Target Start/End: Original strand, 29587158 - 29587238
Alignment:
| Q |
9 |
cttcctttgttcaattacaattttgattatagatttatagtattcaattacttgtctcattatagttatgatcaacatctccttaattt |
97 |
Q |
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||||||||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||| |||||||||||| |
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| T |
29587158 |
cttcctttgttcaattacaattttgattacaa--------tattcaattacttgtctcattataattatgatcaacttctccttaattt |
29587238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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