View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5240-Insertion-6 (Length: 96)
Name: NF5240-Insertion-6
Description: NF5240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5240-Insertion-6 |
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| [»] chr8 (1 HSPs) |
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| [»] scaffold0094 (2 HSPs) |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 89; Significance: 2e-43; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 89; E-Value: 2e-43
Query Start/End: Original strand, 8 - 96
Target Start/End: Original strand, 31243026 - 31243114
Alignment:
| Q |
8 |
caagccttagaagcattacttagacataagcactgtactatttatagttacaaattactataataatcagacttaaaaatatatttttt |
96 |
Q |
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| T |
31243026 |
caagccttagaagcattacttagacataagcactgtactatttatagttacaaattactataataatcagacttaaaaatatatttttt |
31243114 |
T |
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Target: scaffold0094 (Bit Score: 77; Significance: 3e-36; HSPs: 2)
Name: scaffold0094
Description:
Target: scaffold0094; HSP #1
Raw Score: 77; E-Value: 3e-36
Query Start/End: Original strand, 8 - 96
Target Start/End: Original strand, 9737 - 9825
Alignment:
| Q |
8 |
caagccttagaagcattacttagacataagcactgtactatttatagttacaaattactataataatcagacttaaaaatatatttttt |
96 |
Q |
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| T |
9737 |
caagccttagaagcattacttagacataagcaccgtactatttatagttacaaattactataataataagacttaaaaacatatttttt |
9825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0094; HSP #2
Raw Score: 76; E-Value: 1e-35
Query Start/End: Original strand, 8 - 95
Target Start/End: Complemental strand, 10143 - 10056
Alignment:
| Q |
8 |
caagccttagaagcattacttagacataagcactgtactatttatagttacaaattactataataatcagacttaaaaatatattttt |
95 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
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| T |
10143 |
caagccttagaagcattacttagacataagcattgtactatttatagttacaaattactataataatcagacttaaaaagataatttt |
10056 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 73; Significance: 6e-34; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 73; E-Value: 6e-34
Query Start/End: Original strand, 8 - 96
Target Start/End: Original strand, 17215036 - 17215124
Alignment:
| Q |
8 |
caagccttagaagcattacttagacataagcactgtactatttatagttacaaattactataataatcagacttaaaaatatatttttt |
96 |
Q |
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|||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||| |
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| T |
17215036 |
caagccttagaagcattacttagacataagcaatgtattatttatagttacaaattactataataattagacttaaaaagatatttttt |
17215124 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 2e-31
Query Start/End: Original strand, 8 - 96
Target Start/End: Complemental strand, 17215463 - 17215375
Alignment:
| Q |
8 |
caagccttagaagcattacttagacataagcactgtactatttatagttacaaattactataataatcagacttaaaaatatatttttt |
96 |
Q |
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|||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||| |
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| T |
17215463 |
caagccttagaagcattacttagatataaacactgtactatttatagtttcaaattactataataattagacttaaaaatatagttttt |
17215375 |
T |
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