View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5240_high_1 (Length: 1106)
Name: NF5240_high_1
Description: NF5240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5240_high_1 |
 | |
|
| [»] scaffold0286 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 975; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 975; E-Value: 0
Query Start/End: Original strand, 11 - 1087
Target Start/End: Complemental strand, 29122296 - 29121217
Alignment:
| Q |
11 |
atcatcacaatgaaacaaagaagaaaagaatgataccaatagttccctcttagaaattctcatactcattggccattgcaaatgttctttctcccactct |
110 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29122296 |
atcaccacaatgaaacaaagaagaaaagaatgataccaatagttccctcttagaaattttcatactcattggccattgcaaatgttctttctcccactct |
29122197 |
T |
|
| Q |
111 |
tgcacctttgcatgggtcccaattcatacataatgtacaaagtataaatagccatggatataaattgagacatatctccttgtagaaacaataaatatat |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
29122196 |
tgcacctttgcatgggtcccaattcatacataatgtacaaagtataaatagccatgcatataaattgagacatatctccttgtagaaacaacaaatatat |
29122097 |
T |
|
| Q |
211 |
acaatatcttcaatttaattcatggcttctgcatcagggttgaagcgcacagattcaataacagataacaatatgtcatcaccagatgcatcgaagcaga |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29122096 |
acaatatcttcaatttaattcatggcttctgcatcagggttgaagcgcacagattcaataacagataacaatatgtcatcaccagatgcatcgaagcaga |
29121997 |
T |
|
| Q |
311 |
gtcgataccatatgaagaggtgttttgccaagtaccttgagaaaggtagaaggatcataaaagttcatgatttgatggaagaaatggagcaagttataaa |
410 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29121996 |
gtagataccatatgaagaggtgttttgccaagtaccttgagaaaggtagaaggatcataaaagttcatgatttgatggaagaaatggagcaagttataaa |
29121897 |
T |
|
| Q |
411 |
ggaccagaatgataggaatcaaatattggaaggcaatcttggcttcttattaagttttacacaggttaatattttgtcaaccaatttgcannnnnnnnng |
510 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29121896 |
ggaccagaatgataggaatcaaatattggaaggcaatcttggtttcttattaagttttacacaggttaatattttgtcaaccaatttgcattttcttttt |
29121797 |
T |
|
| Q |
511 |
---ctataaattaatttacattttactaaccttatatggactactggaaagacggacactagcatgtccgtctatcactattttttgtcatattttgtcg |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29121796 |
ttcctataaattaatttacattttactaaccttatatggacaactggaaagacggacactagtatgtccgtctatcactattttttgtcatattttgtcg |
29121697 |
T |
|
| Q |
608 |
tctaaatttatttaaatttgaaaaaatgatattaagaaaaatagttagttggaccgaccatattgctttagatatatttggtgtctgacgtgataaacac |
707 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29121696 |
tctaaatttatttaaatttgaaaaaatgatattaagaaaaatagttagttggaaagaccatattgctttagatatatttggtgtctgacgtgataaacac |
29121597 |
T |
|
| Q |
708 |
gtgtagttatatttaatcatatctattctcttaaattattatcgaagtctagggttatatgtcgttgtttcataggcttattaattaatatggattttaa |
807 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29121596 |
gtgtagttatatttaatcatatctattctcttaaattattatcgaagtatagggttatatgtcgttgtttcataggcttattaattaatatggattttaa |
29121497 |
T |
|
| Q |
808 |
tgcttgcaggaagctattgttgatccaccatatgttgcctttgcagtaaggccagaccctggagtttgggaatatgtaaaagtgagctctgagaatcttt |
907 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29121496 |
tgcttgcaggaagctattgttgatccaccatatgttgcctttgcagtaaggccagaccctggagtttgggaatatgtaaaagtgagctctgagaatcttt |
29121397 |
T |
|
| Q |
908 |
cagttgaacctataacatccaccgattacctcaaattcaaggaaagaatatacgatcaaaaatggtacaatgccatttcaattatagtacttttttactt |
1007 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| | || |
|
|
| T |
29121396 |
cagttgaacctataacatccaccgattacctcaaattcaaggaaagaatatacgaccaaaaatggtacaatgccatttcagttatagtactttttcattt |
29121297 |
T |
|
| Q |
1008 |
taaagttttcaacatgtcatgcttccattttccctaattagccaacaatttttaatggttaacttgggtttatgttgtag |
1087 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29121296 |
taaagttttcaacatgtcatgcttccattttccctaattagccaacaatttttaatggttaacttgggtttatgttgtag |
29121217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 75; Significance: 6e-34; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 6e-34
Query Start/End: Original strand, 293 - 476
Target Start/End: Complemental strand, 6732541 - 6732356
Alignment:
| Q |
293 |
cagatgcatcgaagcagagtcgataccatatgaagaggtgttttgccaagtaccttgagaaaggtagaaggatcataaaagttcatgatttgatggaaga |
392 |
Q |
| |
|
|||||| |||||| ||||| |||| || ||||| ||||| |||| ||||||||||||||||||| ||||| ||||| ||||||| ||||||||||| |
|
|
| T |
6732541 |
cagatgtatcgaaacagagcagatatcaaatgaataggtgctttgacaagtaccttgagaaaggtgaaaggaatataaactttcatgacttgatggaaga |
6732442 |
T |
|
| Q |
393 |
aatggagcaagttataaaggaccagaatgataggaatcaaatattggaaggcaatcttggcttc--ttattaagttttacacaggt |
476 |
Q |
| |
|
||||||||||||| |||| ||| ||| | | | |||||||||||||||||||||| |||||||| ||||||||||||||| |||| |
|
|
| T |
6732441 |
aatggagcaagttgtaaatgacaagagtcacaagaatcaaatattggaaggcaattttggcttcttttattaagttttacataggt |
6732356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 826 - 974
Target Start/End: Complemental strand, 6732199 - 6732050
Alignment:
| Q |
826 |
gttgatccaccatatgttgcctttgcagtaag---gccagaccctggagtttgggaatatgtaaaagtgagctctgagaatctttcagttgaacctataa |
922 |
Q |
| |
|
||||||||||| |||||||||||| |||||| || ||| ||| ||||||||| | |||| ||||||| ||||||| ||| || |||||||||||| |
|
|
| T |
6732199 |
gttgatccaccgtatgttgcctttcaagtaagccagcaggacactgaagtttgggagt--gtaagagtgagcgctgagaaccttccacttgaacctataa |
6732102 |
T |
|
| Q |
923 |
catccaccgattacctcaaattcaaggaaagaatatacgatcaaaaatggta |
974 |
Q |
| |
|
|||||||||||||| ||||||| || ||||||||||| ||| |||||||||| |
|
|
| T |
6732101 |
catccaccgattacgtcaaattaaaagaaagaatatatgataaaaaatggta |
6732050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 828 - 883
Target Start/End: Complemental strand, 6654981 - 6654926
Alignment:
| Q |
828 |
tgatccaccatatgttgcctttgcagtaaggccagaccctggagtttgggaatatg |
883 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
6654981 |
tgatccaccatatgttgcctttgcaggaaggccagatcctggagtttgggaatatg |
6654926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 317 - 395
Target Start/End: Original strand, 6528766 - 6528844
Alignment:
| Q |
317 |
accatatgaagaggtgttttgccaagtaccttgagaaaggtagaaggatcataaaagttcatgatttgatggaagaaat |
395 |
Q |
| |
|
|||||| ||||| ||| ||||| |||| |||| ||| ||||||||| | ||||||| ||||||| |||||||||||||| |
|
|
| T |
6528766 |
accatacgaagaagtgctttgcaaagttcctttagagaggtagaagaaccataaaacttcatgacttgatggaagaaat |
6528844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 1e-22; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 810 - 973
Target Start/End: Original strand, 32773817 - 32773980
Alignment:
| Q |
810 |
cttgcaggaagctattgttgatccaccatatgttgcctttgcagtaaggccagaccctggagtttgggaatatgtaaaagtgagctctgagaatctttca |
909 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| ||||||||| | ||||| | || |||||||||||||| ||| || | |||||| | || || |
|
|
| T |
32773817 |
cttgcaggaagctgttgttgatccaccatatgtagcctttgcaattaggcctaatccaggagtttgggaatacgtacgtgtcaattctgaggacctctct |
32773916 |
T |
|
| Q |
910 |
gttgaacctataacatccaccgattacctcaaattcaaggaaagaatatacgatcaaaaatggt |
973 |
Q |
| |
|
||||| ||||| || |||| |||||||||||||||||||||||| |||| || |||||||||| |
|
|
| T |
32773917 |
gttgagcctatcacccccacagattacctcaaattcaaggaaagagtatatgaccaaaaatggt |
32773980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 295 - 398
Target Start/End: Original strand, 32773507 - 32773610
Alignment:
| Q |
295 |
gatgcatcgaagcagagtcgataccatatgaagaggtgttttgccaagtaccttgagaaaggtagaaggatcataaaagttcatgatttgatggaagaaa |
394 |
Q |
| |
|
||||||| || | ||||| ||||||||||||||| ||| ||||| |||||||| || ||||| ||||| ||||| ||| ||||||| || ||||||||| |
|
|
| T |
32773507 |
gatgcattgaggaagagtagataccatatgaagaagtgctttgctaagtacctagaaaaagggagaagaatcatgaaacttcatgaattaatggaagaag |
32773606 |
T |
|
| Q |
395 |
tgga |
398 |
Q |
| |
|
|||| |
|
|
| T |
32773607 |
tgga |
32773610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0286 (Bit Score: 48; Significance: 7e-18; HSPs: 1)
Name: scaffold0286
Description:
Target: scaffold0286; HSP #1
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 828 - 883
Target Start/End: Complemental strand, 10584 - 10529
Alignment:
| Q |
828 |
tgatccaccatatgttgcctttgcagtaaggccagaccctggagtttgggaatatg |
883 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
10584 |
tgatccaccatatgttgcctttgcaggaaggccagatcctggagtttgggaatatg |
10529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 704 - 751
Target Start/End: Original strand, 32931498 - 32931545
Alignment:
| Q |
704 |
acacgtgtagttatatttaatcatatctattctcttaaattattatcg |
751 |
Q |
| |
|
|||| |||||||||||||||||| |||||| |||||||||||||||| |
|
|
| T |
32931498 |
acacatgtagttatatttaatcacttctattttcttaaattattatcg |
32931545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University