View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5240_high_13 (Length: 330)
Name: NF5240_high_13
Description: NF5240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5240_high_13 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 7 - 324
Target Start/End: Complemental strand, 37400499 - 37400182
Alignment:
| Q |
7 |
aaatcaagtttcaaaaccttgattcggactttattaatttttgaaggggtaaaatttagtaaaataaacaaatccctagcacaattcatgctaggatttg |
106 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37400499 |
aaatcaagtttaaaaaccttgattcggactttattgattttttaaggggtaaaatttagtaaaataaacaaatccctagcacaattcatgctaggatttg |
37400400 |
T |
|
| Q |
107 |
atagtttacagacattccattacaaaatcatagtggtgtggtgaataaattaaccacactatgacattaatcatagtgtggtacggtggtgcaaatttca |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||| |
|
|
| T |
37400399 |
atagtttacagacattccattacaaaatcatagtggtgtggtgaataaattaaccacactacgacattaatcataatgtggtacagtggtgcaaatttca |
37400300 |
T |
|
| Q |
207 |
tcatcaataataccatactacattcgccaccactgtaccacacttcagactgccttatacccgcaggtaggggaaatgattaaaggaagaaacatgtttg |
306 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37400299 |
tcatcaataataccatactacattcaccaccactgtaccacactacagactgccttatacccgcaggtaggggaaatgattaaaggaagaaacatgtttg |
37400200 |
T |
|
| Q |
307 |
ttatataatcaaggatat |
324 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
37400199 |
ttatataatcaaggatat |
37400182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University