View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5240_high_16 (Length: 280)
Name: NF5240_high_16
Description: NF5240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5240_high_16 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 14 - 252
Target Start/End: Complemental strand, 12041200 - 12040963
Alignment:
| Q |
14 |
caaaaacaacatcgcaaagtaaatattattaaaaattgcaatagataacaaaacatgaaaatccacatctttcatcctcgttagtccttcaaatttataa |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
12041200 |
caaaaacaacatcgcaaagtaaatattattataaattgcaatagataacaaaacatgaaaatccacatctttcatcctctttagtccttcaaatttataa |
12041101 |
T |
|
| Q |
114 |
cctgaaaatcaaaacatgccagtactgtataattagtgtacaaaattattgaaaattaaaattgatgcaaattctagaatatcgtactgatgcttaaaat |
213 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
12041100 |
ccagaaaatcaaaacatgccagtactgtataattagtgtacaaaattattgaaaattaaaattgatgcaaattctag-atatcgtattgatgcttaaaat |
12041002 |
T |
|
| Q |
214 |
gattaaattttctgaaataatgaaatgataaattttata |
252 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12041001 |
gattaaattttctgaaataatgaaatgataaattttata |
12040963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University