View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5240_high_19 (Length: 260)
Name: NF5240_high_19
Description: NF5240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5240_high_19 |
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Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 37 - 253
Target Start/End: Original strand, 33526516 - 33526732
Alignment:
| Q |
37 |
caagctaaagaatgtttttggaattcttgtggacacatttctgaaatggtccctgttcctgactggcatgtttggttctagagttcaatgacaagagagt |
136 |
Q |
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| T |
33526516 |
caagctaaagaatgtttttggaattcttgtggacacatttctgaaatggtccctgttcctgactggcatgtttggttctagagttcaatgacaagagagt |
33526615 |
T |
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| Q |
137 |
agaatagatttaactcttggttctttttatggtttgatccagggacatactgacatacacacaattttgtttcaacagtgagcacnnnnnnnctctactt |
236 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
33526616 |
agaatagatttaactcttggttctttttatggtttgatccagggacatactgacatacacacaattttgtttcaacagtgagcactttttttctctactt |
33526715 |
T |
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| Q |
237 |
gtgttgtactatctctg |
253 |
Q |
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||||||||||||||||| |
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| T |
33526716 |
gtgttgtactatctctg |
33526732 |
T |
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